Variant report

Variant	rs2853177
Chromosome Location	chr8:105377050-105377051
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10808389	0.89[ASN][1000 genomes]
rs12543989	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1317417	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1355692	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2334119	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2458428	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2458429	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2514674	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2514675	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2669440	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2669442	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2669443	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2853134	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2853135	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2853136	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2853138	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2853139	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2853140	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2853142	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2853144	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2853149	1.00[ASW][hapmap];0.84[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs2853166	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4734787	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4734788	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4734789	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4734790	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4734791	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62510078	0.84[EUR][1000 genomes]
rs62510079	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1032775	chr8:105311364-105409972	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105366400-105378200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:105374000-105378800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr8:105374000-105379000	Weak transcription	Adipose Nuclei	Adipose
4	chr8:105374200-105379000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr8:105374600-105378600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr8:105374600-105378800	Weak transcription	HUVEC	blood vessel
7	chr8:105374800-105378200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr8:105375000-105378000	Weak transcription	NH-A	brain
9	chr8:105375000-105378000	Weak transcription	NHDF-Ad	bronchial
10	chr8:105375000-105378200	Weak transcription	Osteobl	bone
11	chr8:105375000-105378400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr8:105375000-105378400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr8:105375000-105378600	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr8:105375000-105378600	Weak transcription	NHLF	lung
15	chr8:105375000-105379200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr8:105375200-105378400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr8:105375400-105379400	Weak transcription	Primary hematopoietic stem cells	blood
18	chr8:105376600-105378000	Enhancers	Fetal Brain Male	brain
19	chr8:105377000-105378000	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr8:105377000-105378400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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