Variant report

Variant	rs10809628
Chromosome Location	chr9:11874825-11874826
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 241 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10809611	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10809627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10960276	0.85[EUR][1000 genomes]
rs10960281	0.84[ASN][1000 genomes]
rs10960282	0.84[ASN][1000 genomes]
rs10960284	0.84[ASN][1000 genomes]
rs10960289	0.86[EUR][1000 genomes]
rs10960297	0.88[EUR][1000 genomes]
rs10960298	0.88[EUR][1000 genomes]
rs10960299	0.84[EUR][1000 genomes]
rs10960334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10960336	1.00[ASN][1000 genomes]
rs11787808	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12376446	0.88[EUR][1000 genomes]
rs12685820	0.87[ASN][1000 genomes]
rs1386304	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16928155	0.86[ASN][1000 genomes]
rs16928156	0.87[ASN][1000 genomes]
rs17820822	0.88[EUR][1000 genomes]
rs62549024	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62552272	0.86[EUR][1000 genomes]
rs66592358	0.87[ASN][1000 genomes]
rs72706110	0.84[ASN][1000 genomes]
rs72706117	0.87[ASN][1000 genomes]
rs72706124	0.87[ASN][1000 genomes]
rs72706129	0.87[ASN][1000 genomes]
rs7866002	0.87[ASN][1000 genomes]
rs7866528	0.87[ASN][1000 genomes]
rs7866769	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:212 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752276	chr9:11224627-11958106	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2755055	chr9:11262339-11952796	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1025869	chr9:11280403-11956480	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv892343	chr9:11317902-11929890	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1033078	chr9:11350249-12121365	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv540003	chr9:11350249-12121365	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv2761283	chr9:11523636-12014548	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv492274	chr9:11530555-12074235	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv892355	chr9:11609469-12176780	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv892358	chr9:11636204-12020873	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv1023847	chr9:11641091-11888221	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv1019320	chr9:11645592-11934134	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv1020402	chr9:11647401-11934365	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv892360	chr9:11647509-12078499	Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv613439	chr9:11649257-11935261	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	nsv613441	chr9:11651144-11934943	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
17	nsv613442	chr9:11651144-11935261	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
18	nsv1034261	chr9:11659096-11904449	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
19	nsv529088	chr9:11659096-11904449	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
20	nsv540005	chr9:11659096-11904449	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
21	nsv1016824	chr9:11659295-11904309	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
22	nsv540007	chr9:11659295-11904309	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
23	nsv1029075	chr9:11659295-11952582	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
24	nsv540008	chr9:11659295-11952582	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
25	nsv1030929	chr9:11659295-12196202	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
26	nsv540009	chr9:11659295-12196202	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
27	nsv1022614	chr9:11675205-11888221	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
28	nsv540010	chr9:11675205-11888221	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
29	nsv1032859	chr9:11675205-11956480	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
30	nsv540011	chr9:11675205-11956480	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
31	nsv429992	chr9:11676200-12520300	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
32	nsv1022308	chr9:11694489-11958106	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
33	nsv1028617	chr9:11695033-11993964	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
34	nsv540012	chr9:11695033-11993964	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
35	nsv1033473	chr9:11695033-12032379	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
36	nsv540013	chr9:11695033-12032379	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
37	esv3584901	chr9:11698781-11897834	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
38	nsv892367	chr9:11700487-11951204	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
39	nsv831509	chr9:11702977-11887425	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
40	nsv1021554	chr9:11713431-11904448	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	lncRNA	3 gene(s)	inside rSNPs	diseases
41	nsv540014	chr9:11713431-11904448	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	lncRNA	3 gene(s)	inside rSNPs	diseases
42	nsv1021312	chr9:11713431-12196341	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
43	nsv540015	chr9:11713431-12196341	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
44	nsv1029964	chr9:11713631-11952582	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	lncRNA	3 gene(s)	inside rSNPs	diseases
45	nsv540016	chr9:11713631-11952582	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	lncRNA	3 gene(s)	inside rSNPs	diseases
46	nsv1030782	chr9:11713631-12114298	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
47	nsv540017	chr9:11713631-12114298	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
48	esv2764137	chr9:11724529-12326564	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
49	nsv892373	chr9:11727020-12071175	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	lncRNA	3 gene(s)	inside rSNPs	diseases
50	nsv1025645	chr9:11735515-11967982	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:11874200-11875000	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr9:11874200-11875400	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr9:11874600-11875800	Weak transcription	H9 Cell Line	embryonic stem cell

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