Variant report

Variant	rs10809994
Chromosome Location	chr9:13596316-13596317
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10809995	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1408319	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1931231	0.87[EUR][1000 genomes]
rs34804190	0.93[AFR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892585	chr9:13508282-13621142	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1017792	chr9:13529680-13654107	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1023684	chr9:13529680-13744602	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv540067	chr9:13529680-13744602	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1026786	chr9:13530105-13627116	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13587600-13596600	Weak transcription	NH-A	brain
2	chr9:13588800-13599200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr9:13590600-13596600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr9:13591000-13596600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr9:13591400-13596400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr9:13596000-13598000	Enhancers	H1 Cell Line	embryonic stem cell
7	chr9:13596200-13596400	Weak transcription	Brain Hippocampus Middle	brain
8	chr9:13596200-13596600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr9:13596200-13596600	Enhancers	Psoas Muscle	Psoas
10	chr9:13596200-13597000	Enhancers	H9 Cell Line	embryonic stem cell
11	chr9:13596200-13597600	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr9:13596200-13597600	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr9:13596200-13597600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr9:13596200-13597800	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr9:13596200-13597800	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr9:13596200-13597800	Enhancers	Fetal Muscle Leg	muscle
17	chr9:13596200-13598400	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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