Variant report

Variant	rs34804190
Chromosome Location	chr9:13596674-13596675
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:13589369..13591855-chr9:13595557..13598165,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10809994	0.93[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs10809995	0.91[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1408319	0.80[EUR][1000 genomes]
rs1931231	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2382400	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892585	chr9:13508282-13621142	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1017792	chr9:13529680-13654107	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1023684	chr9:13529680-13744602	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv540067	chr9:13529680-13744602	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1026786	chr9:13530105-13627116	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13588800-13599200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr9:13596000-13598000	Enhancers	H1 Cell Line	embryonic stem cell
3	chr9:13596200-13597000	Enhancers	H9 Cell Line	embryonic stem cell
4	chr9:13596200-13597600	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr9:13596200-13597600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr9:13596200-13597600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr9:13596200-13597800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr9:13596200-13597800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr9:13596200-13597800	Enhancers	Fetal Muscle Leg	muscle
10	chr9:13596200-13598400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr9:13596400-13596800	Enhancers	Brain Cingulate Gyrus	brain
12	chr9:13596400-13597000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr9:13596400-13597000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr9:13596400-13597000	Enhancers	Brain Anterior Caudate	brain
15	chr9:13596400-13597000	Enhancers	Brain Hippocampus Middle	brain
16	chr9:13596400-13597600	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr9:13596400-13597600	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr9:13596400-13597800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
19	chr9:13596600-13596800	Enhancers	NH-A	brain
20	chr9:13596600-13597000	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr9:13596600-13597200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr9:13596600-13597800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr9:13596600-13607800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr9:13596600-13607800	Weak transcription	Psoas Muscle	Psoas

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