Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs13283645	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13286204	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13291088	0.92[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13292270	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13292571	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13298062	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13299074	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13299961	0.84[AMR][1000 genomes]
rs17192194	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17277467	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17277593	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs34602246	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34660040	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34764349	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs35165583	0.92[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs35246532	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs35249758	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs35377705	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs35684545	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs35727886	0.92[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs35907479	0.92[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs35911657	0.92[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs35960404	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71511071	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs71511072	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv613635	chr9:13893246-13961462	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13916000-13932800	Weak transcription	Psoas Muscle	Psoas
2	chr9:13924200-13938000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:13924800-13932400	Weak transcription	Fetal Muscle Leg	muscle
4	chr9:13926600-13929000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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