Variant report
Variant | rs71511071 |
---|---|
Chromosome Location | chr9:13951619-13951620 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10810058 | 0.84[AMR][1000 genomes];0.85[ASN][1000 genomes] |
rs13283645 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs13285663 | 0.93[ASN][1000 genomes] |
rs13286204 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs13291088 | 0.92[AMR][1000 genomes];0.93[ASN][1000 genomes] |
rs13292270 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs13292571 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs13298062 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs13299074 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs13299961 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs17192194 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17277467 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17277593 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs34602246 | 0.88[AMR][1000 genomes];0.93[ASN][1000 genomes] |
rs34660040 | 0.88[AMR][1000 genomes];0.93[ASN][1000 genomes] |
rs34764349 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs35165583 | 0.92[AMR][1000 genomes];0.93[ASN][1000 genomes] |
rs35246532 | 0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs35249758 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs35377705 | 0.88[AMR][1000 genomes];0.93[ASN][1000 genomes] |
rs35684545 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs35727886 | 0.92[AMR][1000 genomes];0.93[ASN][1000 genomes] |
rs35907479 | 0.92[AMR][1000 genomes];0.93[ASN][1000 genomes] |
rs35911657 | 0.92[AMR][1000 genomes];0.93[ASN][1000 genomes] |
rs35960404 | 0.92[AMR][1000 genomes];0.93[ASN][1000 genomes] |
rs55776100 | 0.81[ASN][1000 genomes] |
rs66840986 | 0.81[EUR][1000 genomes] |
rs71511072 | 0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1022001 | chr9:13717736-13983738 | Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
2 | nsv1033764 | chr9:13764918-14226168 | Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
3 | nsv613635 | chr9:13893246-13961462 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
4 | nsv1015319 | chr9:13931836-13970419 | Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
5 | nsv613636 | chr9:13936438-13975480 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
6 | nsv892593 | chr9:13948798-14233159 | Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr9:13933600-13961600 | Weak transcription | Psoas Muscle | Psoas |
2 | chr9:13939800-13956200 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
3 | chr9:13940400-13962000 | Weak transcription | Left Ventricle | heart |
4 | chr9:13948200-13954200 | Weak transcription | Fetal Lung | lung |