Variant report

Variant	rs55776100
Chromosome Location	chr9:13963619-13963620
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs13283645	0.81[ASN][1000 genomes]
rs13286204	0.81[ASN][1000 genomes]
rs13290672	0.89[ASN][1000 genomes]
rs13291790	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13292270	0.81[ASN][1000 genomes]
rs13292571	0.81[ASN][1000 genomes]
rs13294545	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13298062	0.81[ASN][1000 genomes]
rs13299074	0.81[ASN][1000 genomes]
rs13299961	0.88[ASN][1000 genomes]
rs17192194	0.81[ASN][1000 genomes]
rs17277467	0.81[ASN][1000 genomes]
rs17277593	0.81[ASN][1000 genomes]
rs34764349	0.81[ASN][1000 genomes]
rs35684545	0.81[ASN][1000 genomes]
rs66840986	0.94[ASN][1000 genomes]
rs71511071	0.81[ASN][1000 genomes]
rs71511072	0.81[ASN][1000 genomes]
rs72715813	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1015319	chr9:13931836-13970419	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv613636	chr9:13936438-13975480	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv892593	chr9:13948798-14233159	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13961800-13967200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:13962200-13966800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr9:13962200-13969600	Weak transcription	Psoas Muscle	Psoas
4	chr9:13962400-13969600	Weak transcription	Left Ventricle	heart
5	chr9:13963400-13963800	Enhancers	GM12878-XiMat	blood
6	chr9:13963600-13966800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:13963600-13967200	Weak transcription	Fetal Lung	lung
8	chr9:13963600-13969800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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