Variant report

Variant	rs13285663
Chromosome Location	chr9:13937519-13937520
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10119201	0.86[EUR][1000 genomes]
rs10961339	1.00[JPT][hapmap]
rs12338757	0.82[EUR][1000 genomes]
rs13283645	0.93[ASN][1000 genomes]
rs13283743	1.00[JPT][hapmap]
rs13286204	0.93[ASN][1000 genomes]
rs13291088	0.86[ASN][1000 genomes]
rs13292270	0.93[ASN][1000 genomes]
rs13292571	0.93[ASN][1000 genomes]
rs13298062	0.93[ASN][1000 genomes]
rs13299074	0.93[ASN][1000 genomes]
rs17191861	1.00[CHB][hapmap]
rs17192194	0.93[ASN][1000 genomes]
rs17192270	0.81[AFR][1000 genomes]
rs17277411	0.81[AFR][1000 genomes]
rs17277467	0.93[ASN][1000 genomes]
rs17277593	0.93[ASN][1000 genomes]
rs17278798	1.00[JPT][hapmap]
rs34602246	0.86[ASN][1000 genomes]
rs34660040	0.86[ASN][1000 genomes]
rs34764349	0.93[ASN][1000 genomes]
rs35165583	0.86[ASN][1000 genomes]
rs35246532	0.86[ASN][1000 genomes]
rs35249758	0.86[ASN][1000 genomes]
rs35377705	0.86[ASN][1000 genomes]
rs35684545	0.93[ASN][1000 genomes]
rs35727886	0.86[ASN][1000 genomes]
rs35907479	0.86[ASN][1000 genomes]
rs35911657	0.86[ASN][1000 genomes]
rs35960404	0.86[ASN][1000 genomes]
rs4631565	0.80[ASN][1000 genomes]
rs7023574	1.00[JPT][hapmap]
rs71511071	0.93[ASN][1000 genomes]
rs71511072	0.93[ASN][1000 genomes]
rs957691	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv613635	chr9:13893246-13961462	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1015319	chr9:13931836-13970419	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv613636	chr9:13936438-13975480	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13924200-13938000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:13933000-13937800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr9:13933400-13938800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr9:13933600-13938200	Weak transcription	Fetal Heart	heart
5	chr9:13933600-13938800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr9:13933600-13939000	Weak transcription	Fetal Muscle Leg	muscle
7	chr9:13933600-13939600	Weak transcription	Adipose Nuclei	Adipose
8	chr9:13933600-13939600	Weak transcription	Left Ventricle	heart
9	chr9:13933600-13961600	Weak transcription	Psoas Muscle	Psoas
10	chr9:13934800-13938800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr9:13936200-13942000	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr9:13937200-13938000	Weak transcription	Fetal Lung	lung
13	chr9:13937400-13939400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr9:13937400-13940000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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