Variant report

Variant	rs10961339
Chromosome Location	chr9:14024159-14024160
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:14022228..14025060-chr9:14026998..14028681,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10124838	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10124865	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10961322	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10961330	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10961343	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12351326	0.89[CEU][hapmap];0.83[TSI][hapmap];0.86[EUR][1000 genomes]
rs13283743	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13285943	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13286764	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13289170	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs17278798	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs28657464	0.83[AMR][1000 genomes]
rs34680040	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35113032	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35960176	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4631565	0.87[ASN][1000 genomes]
rs6474804	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7023574	0.95[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs737668	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7848012	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7859915	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv892593	chr9:13948798-14233159	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13994000-14027000	Weak transcription	Aorta	Aorta
2	chr9:14014000-14027000	Weak transcription	Right Atrium	heart
3	chr9:14015400-14027000	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr9:14020600-14026800	Weak transcription	Fetal Heart	heart
5	chr9:14022400-14024200	Weak transcription	Psoas Muscle	Psoas
6	chr9:14022600-14024400	Weak transcription	Left Ventricle	heart
7	chr9:14022600-14024800	Weak transcription	Right Ventricle	heart
8	chr9:14022600-14026600	Weak transcription	HUVEC	blood vessel
9	chr9:14022600-14026800	Weak transcription	Fetal Lung	lung
10	chr9:14022800-14028200	Weak transcription	Hela-S3	cervix
11	chr9:14023200-14029400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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