Variant report

Variant	rs10961343
Chromosome Location	chr9:14027818-14027819
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:14022228..14025060-chr9:14026998..14028681,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10124838	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10810057	0.85[JPT][hapmap]
rs10961339	1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13283743	1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13285943	0.80[AMR][1000 genomes]
rs13286764	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17278798	0.85[JPT][hapmap]
rs35113032	0.85[EUR][1000 genomes]
rs7023574	0.82[JPT][hapmap];0.80[AMR][1000 genomes]
rs737668	0.81[AMR][1000 genomes]
rs7848012	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv892593	chr9:13948798-14233159	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1023303	chr9:14025605-14286269	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv540069	chr9:14025605-14286269	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14022800-14028200	Weak transcription	Hela-S3	cervix
2	chr9:14023200-14029400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr9:14025600-14029800	Weak transcription	Right Ventricle	heart
4	chr9:14026600-14028400	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr9:14026600-14029800	Enhancers	HUVEC	blood vessel
6	chr9:14026800-14028000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr9:14026800-14028400	Enhancers	Fetal Lung	lung
8	chr9:14026800-14028600	Enhancers	Liver	Liver
9	chr9:14026800-14028600	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr9:14026800-14028800	Enhancers	Psoas Muscle	Psoas
11	chr9:14026800-14029000	Enhancers	Fetal Heart	heart
12	chr9:14027000-14028000	Enhancers	Fetal Muscle Leg	muscle
13	chr9:14027000-14028000	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr9:14027000-14028600	Enhancers	Fetal Intestine Small	intestine
15	chr9:14027000-14028800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr9:14027200-14028000	Enhancers	Fetal Stomach	stomach
17	chr9:14027200-14028200	Weak transcription	Fetal Kidney	kidney
18	chr9:14027400-14029800	Weak transcription	Stomach Mucosa	stomach
19	chr9:14027400-14030200	Weak transcription	Fetal Intestine Large	intestine
20	chr9:14027400-14030200	Weak transcription	Left Ventricle	heart
21	chr9:14027400-14030800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr9:14027400-14032200	Weak transcription	Lung	lung
23	chr9:14027600-14028000	Enhancers	Duodenum Mucosa	Duodenum
24	chr9:14027600-14029800	Weak transcription	HSMM	muscle
25	chr9:14027600-14030800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr9:14027600-14030800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr9:14027800-14028200	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr9:14027800-14029800	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr9:14027800-14029800	Weak transcription	Adipose Nuclei	Adipose
30	chr9:14027800-14029800	Weak transcription	Aorta	Aorta
31	chr9:14027800-14029800	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr9:14027800-14029800	Weak transcription	Right Atrium	heart
33	chr9:14027800-14030400	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr9:14027800-14030800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr9:14027800-14030800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr9:14027800-14030800	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr9:14027800-14031000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr9:14027800-14031000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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