Variant report

Variant	rs10124838
Chromosome Location	chr9:14018788-14018789
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10124865	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10961322	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10961330	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10961339	0.88[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10961343	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1322128	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13283743	0.88[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13285943	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13286764	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17278798	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs28657464	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34680040	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35113032	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35960176	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4631565	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6474804	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7019866	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7023574	0.81[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes]
rs737668	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7848012	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7859915	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv892593	chr9:13948798-14233159	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13994000-14027000	Weak transcription	Aorta	Aorta
2	chr9:14014000-14022000	Weak transcription	Left Ventricle	heart
3	chr9:14014000-14022000	Weak transcription	Psoas Muscle	Psoas
4	chr9:14014000-14027000	Weak transcription	Right Atrium	heart
5	chr9:14015400-14027000	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr9:14018400-14020000	Weak transcription	Fetal Heart	heart
7	chr9:14018600-14019800	Weak transcription	Pancreas	Pancrea
8	chr9:14018600-14021600	Weak transcription	Fetal Lung	lung
9	chr9:14018600-14022000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr9:14018600-14022000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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