Variant report
| Variant | rs1322128 |
|---|---|
| Chromosome Location | chr9:14001624-14001625 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10124838 | 0.84[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs10124865 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs10961322 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs10961330 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs13283743 | 0.80[AMR][1000 genomes] |
| rs13285943 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs13289170 | 0.81[JPT][hapmap] |
| rs13293126 | 0.86[ASN][1000 genomes] |
| rs17278798 | 0.89[CEU][hapmap] |
| rs28412855 | 0.86[ASN][1000 genomes] |
| rs28657464 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs34057664 | 0.80[ASN][1000 genomes] |
| rs34680040 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs35149522 | 0.80[ASN][1000 genomes] |
| rs35960176 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs6474804 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs7018953 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7019866 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs7023574 | 0.85[CEU][hapmap] |
| rs737668 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs7848012 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs7859915 | 0.94[AMR][1000 genomes];0.93[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1033764 | chr9:13764918-14226168 | Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv892593 | chr9:13948798-14233159 | Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv892594 | chr9:13970372-14005286 | Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:13994000-14027000 | Weak transcription | Aorta | Aorta |
