Variant report

Variant	rs7848012
Chromosome Location	chr9:14012182-14012183
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10124838	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10124865	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1022761	0.85[ASN][1000 genomes]
rs10961322	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10961330	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10961339	0.81[CEU][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];0.89[TSI][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10961343	0.81[AMR][1000 genomes]
rs12351326	0.81[TSI][hapmap]
rs1322128	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1322129	0.85[ASN][1000 genomes]
rs13283743	0.81[CEU][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13285943	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13286764	0.90[AMR][1000 genomes]
rs17278798	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs28657464	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34680040	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35113032	0.81[AMR][1000 genomes]
rs35960176	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4631565	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6474804	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7018953	0.86[EUR][1000 genomes]
rs7019866	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7023574	1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs737668	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7859915	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv892593	chr9:13948798-14233159	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13994000-14027000	Weak transcription	Aorta	Aorta
2	chr9:14011000-14012200	Weak transcription	Psoas Muscle	Psoas
3	chr9:14011200-14012400	Weak transcription	Right Atrium	heart
4	chr9:14011600-14012600	Enhancers	Fetal Lung	lung
5	chr9:14011800-14014800	Enhancers	Fetal Heart	heart
6	chr9:14011800-14015400	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr9:14012000-14012400	Enhancers	Right Ventricle	heart
8	chr9:14012000-14012600	Enhancers	Fetal Muscle Leg	muscle
9	chr9:14012000-14014000	Enhancers	Left Ventricle	heart
10	chr9:14012000-14014800	Enhancers	Skeletal Muscle Male	skeletal muscle

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