Variant report

Variant	rs957691
Chromosome Location	chr9:13934368-13934369
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10117560	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10119201	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10122002	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10810059	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10961303	0.82[JPT][hapmap]
rs12337618	0.91[JPT][hapmap]
rs12338757	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13285663	0.81[EUR][1000 genomes]
rs16931157	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2382427	0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs2382428	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4130987	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4478664	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4636302	0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7031231	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7857701	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7875036	0.81[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv613635	chr9:13893246-13961462	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1015319	chr9:13931836-13970419	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13924200-13938000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:13931600-13935800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr9:13933000-13937400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr9:13933000-13937800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr9:13933200-13937000	Weak transcription	Fetal Lung	lung
6	chr9:13933400-13938800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr9:13933600-13938200	Weak transcription	Fetal Heart	heart
8	chr9:13933600-13938800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr9:13933600-13939000	Weak transcription	Fetal Muscle Leg	muscle
10	chr9:13933600-13939600	Weak transcription	Adipose Nuclei	Adipose
11	chr9:13933600-13939600	Weak transcription	Left Ventricle	heart
12	chr9:13933600-13961600	Weak transcription	Psoas Muscle	Psoas

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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