Variant report

Variant	rs2382427
Chromosome Location	chr9:13928028-13928029
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10117560	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10119201	0.82[ASN][1000 genomes]
rs10122002	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10810059	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10961303	0.90[JPT][hapmap]
rs12337618	1.00[JPT][hapmap]
rs12338757	0.88[ASN][1000 genomes]
rs16931157	0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs16931165	0.83[AMR][1000 genomes]
rs2382428	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4130987	0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4478664	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4636302	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7039291	0.84[AMR][1000 genomes]
rs7857701	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7875036	1.00[JPT][hapmap];0.81[YRI][hapmap];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs957691	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv613635	chr9:13893246-13961462	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13916000-13932800	Weak transcription	Psoas Muscle	Psoas
2	chr9:13924200-13938000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:13924800-13932400	Weak transcription	Fetal Muscle Leg	muscle
4	chr9:13926600-13929000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr9:13926800-13929800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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