Variant report

Variant	rs4130987
Chromosome Location	chr9:13934316-13934317
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10961303	0.82[JPT][hapmap]
rs12337618	0.91[JPT][hapmap]
rs12338757	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs16931157	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16931165	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2382427	0.84[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap];0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4478664	0.81[ASN][1000 genomes]
rs4636302	0.81[AMR][1000 genomes]
rs56111057	0.84[EUR][1000 genomes]
rs7039291	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7875036	0.90[JPT][hapmap];0.83[YRI][hapmap];0.81[AMR][1000 genomes]
rs957691	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv613635	chr9:13893246-13961462	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1015319	chr9:13931836-13970419	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13924200-13938000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:13931600-13935800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr9:13933000-13937400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr9:13933000-13937800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr9:13933200-13937000	Weak transcription	Fetal Lung	lung
6	chr9:13933400-13938800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr9:13933600-13938200	Weak transcription	Fetal Heart	heart
8	chr9:13933600-13938800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr9:13933600-13939000	Weak transcription	Fetal Muscle Leg	muscle
10	chr9:13933600-13939600	Weak transcription	Adipose Nuclei	Adipose
11	chr9:13933600-13939600	Weak transcription	Left Ventricle	heart
12	chr9:13933600-13961600	Weak transcription	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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