Variant report

Variant	rs10810068
Chromosome Location	chr9:13988256-13988257
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10756523	0.81[ASN][1000 genomes]
rs10810066	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10810069	0.81[ASN][1000 genomes]
rs10961320	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10961321	0.83[EUR][1000 genomes]
rs35164103	0.85[EUR][1000 genomes]
rs60801366	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6474800	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6474801	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7030368	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7034080	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7044986	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs755267	0.81[ASN][1000 genomes]
rs7853932	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7854431	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7875700	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs870409	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv892593	chr9:13948798-14233159	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv892594	chr9:13970372-14005286	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13984600-13991200	Weak transcription	Aorta	Aorta
2	chr9:13986000-13990400	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr9:13987800-13991600	Weak transcription	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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