Variant report

Variant	rs35164103
Chromosome Location	chr9:14007210-14007211
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10810068	0.85[EUR][1000 genomes]
rs10961320	0.92[EUR][1000 genomes]
rs10961321	0.94[EUR][1000 genomes]
rs60801366	0.89[EUR][1000 genomes]
rs7034080	0.95[EUR][1000 genomes]
rs7044986	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv892593	chr9:13948798-14233159	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13994000-14027000	Weak transcription	Aorta	Aorta
2	chr9:14005400-14007400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:14006400-14007600	Enhancers	Fetal Lung	lung
4	chr9:14006800-14007400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr9:14007200-14007400	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr9:14007200-14007400	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
7	chr9:14007200-14007400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr9:14007200-14007400	Flanking Bivalent TSS/Enh	Pancreatic Islets	Pancreatic Islet
9	chr9:14007200-14007400	Flanking Active TSS	HSMM	muscle
10	chr9:14007200-14007600	Enhancers	Fetal Brain Male	brain
11	chr9:14007200-14007600	Active TSS	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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