Variant report

Variant	rs10810705
Chromosome Location	chr9:17004418-17004419
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10962816	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13299667	0.82[EUR][1000 genomes]
rs13299954	0.81[EUR][1000 genomes]
rs263638	0.83[EUR][1000 genomes]
rs62560462	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62560463	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv2764141	chr9:16903446-17351711	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv613692	chr9:16963863-17070633	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16997600-17004600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr9:17002200-17004800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:17003400-17004600	Enhancers	Muscle Satellite Cultured Cells	--
4	chr9:17003400-17004600	Enhancers	NHDF-Ad	bronchial
5	chr9:17003400-17005000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr9:17003400-17005400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr9:17003600-17004600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr9:17003600-17004800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr9:17003600-17004800	Enhancers	Fetal Kidney	kidney
10	chr9:17003600-17005400	Enhancers	HSMM	muscle
11	chr9:17003800-17005000	Enhancers	NHEK	skin
12	chr9:17003800-17005800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr9:17004000-17005000	Enhancers	Fetal Muscle Leg	muscle
14	chr9:17004000-17005000	Enhancers	NH-A	brain
15	chr9:17004000-17005800	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr9:17004000-17005800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr9:17004000-17006200	Enhancers	Fetal Lung	lung
18	chr9:17004200-17005200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr9:17004200-17005200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr9:17004400-17004600	Flanking Active TSS	Osteobl	bone
21	chr9:17004400-17005000	Enhancers	HSMMtube	muscle
22	chr9:17004400-17005200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr9:17004400-17005200	Enhancers	Fetal Intestine Large	intestine
24	chr9:17004400-17005600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
25	chr9:17004400-17005600	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr9:17004400-17005600	Enhancers	NHLF	lung
27	chr9:17004400-17005800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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