Variant report

Variant	rs263638
Chromosome Location	chr9:17019858-17019859
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10810705	0.83[EUR][1000 genomes]
rs10962816	0.93[EUR][1000 genomes]
rs13288887	0.83[EUR][1000 genomes]
rs13299667	0.91[EUR][1000 genomes]
rs13299760	0.86[EUR][1000 genomes]
rs13299954	0.90[EUR][1000 genomes]
rs17825396	0.86[EUR][1000 genomes]
rs263637	0.85[ASN][1000 genomes]
rs263641	0.93[AFR][1000 genomes]
rs263644	0.81[AFR][1000 genomes]
rs34953033	0.84[EUR][1000 genomes]
rs36096349	0.84[EUR][1000 genomes]
rs366216	0.91[CEU][hapmap]
rs374399	0.81[ASN][1000 genomes]
rs385801	0.83[AFR][1000 genomes]
rs450114	0.83[AFR][1000 genomes]
rs62560462	0.94[EUR][1000 genomes]
rs62560464	0.86[EUR][1000 genomes]
rs62560465	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv2764141	chr9:16903446-17351711	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv613692	chr9:16963863-17070633	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv892656	chr9:17008137-17076367	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv892657	chr9:17008137-17223492	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17016600-17020400	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr9:17018400-17021200	Weak transcription	Fetal Thymus	thymus
3	chr9:17019200-17021000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr9:17019400-17020000	Enhancers	Stomach Mucosa	stomach
5	chr9:17019400-17021200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr9:17019400-17021200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr9:17019400-17022400	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr9:17019600-17021200	Weak transcription	NHEK	skin
9	chr9:17019600-17022000	Enhancers	Dnd41	blood
10	chr9:17019800-17020000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr9:17019800-17021400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr9:17019800-17021600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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