Variant report

Variant	rs10810888
Chromosome Location	chr9:18023977-18023978
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1028963	0.81[EUR][1000 genomes]
rs10738493	0.84[AMR][1000 genomes]
rs10738494	0.80[EUR][1000 genomes]
rs10738498	0.82[EUR][1000 genomes]
rs10810887	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10963402	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1329921	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1329932	0.88[AFR][1000 genomes]
rs1329933	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1360231	0.81[EUR][1000 genomes]
rs1360232	0.81[EUR][1000 genomes]
rs1360233	0.82[AMR][1000 genomes]
rs1360237	0.84[AFR][1000 genomes]
rs1411242	0.81[EUR][1000 genomes]
rs1411248	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1419161	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2077852	0.80[EUR][1000 genomes]
rs2186634	0.80[EUR][1000 genomes]
rs35338418	0.80[AMR][1000 genomes]
rs4961455	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67256698	0.80[AMR][1000 genomes]
rs7021852	0.82[EUR][1000 genomes]
rs725546	0.81[EUR][1000 genomes]
rs7865493	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7866191	0.81[EUR][1000 genomes]
rs9987604	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv613706	chr9:17718918-18090934	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv613707	chr9:17720175-18070475	Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv613708	chr9:17720175-18072085	Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1021862	chr9:17931213-18052101	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2752288	chr9:17965723-18036892	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1021605	chr9:18002205-18271109	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10810888	ACER2	cis	parietal	SCAN
rs10810888	HAUS6	cis	cerebellum	SCAN
rs10810888	TTC39B	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18022400-18031600	Weak transcription	Aorta	Aorta
2	chr9:18022400-18036000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr9:18023200-18024000	Enhancers	HUVEC	blood vessel

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