Variant report

Variant	rs10963402
Chromosome Location	chr9:18032732-18032733
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1028963	0.82[EUR][1000 genomes]
rs10738494	0.82[EUR][1000 genomes]
rs10738496	0.85[EUR][1000 genomes]
rs10738497	0.85[EUR][1000 genomes]
rs10738498	0.83[EUR][1000 genomes]
rs10756924	0.87[ASN][1000 genomes]
rs10810888	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1329921	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1329933	0.84[EUR][1000 genomes]
rs1360231	0.84[EUR][1000 genomes]
rs1360232	0.84[EUR][1000 genomes]
rs1411242	0.84[EUR][1000 genomes]
rs1411248	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1419161	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2077852	0.83[EUR][1000 genomes]
rs2186634	0.81[EUR][1000 genomes]
rs4961455	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7021852	0.85[EUR][1000 genomes]
rs725546	0.82[EUR][1000 genomes]
rs7865493	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7866191	0.84[EUR][1000 genomes]
rs7872884	0.82[EUR][1000 genomes]
rs9987604	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv613706	chr9:17718918-18090934	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv613707	chr9:17720175-18070475	Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv613708	chr9:17720175-18072085	Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1021862	chr9:17931213-18052101	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2752288	chr9:17965723-18036892	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1021605	chr9:18002205-18271109	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18022400-18036000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:18031600-18032800	Enhancers	Aorta	Aorta
3	chr9:18032200-18039600	Weak transcription	Fetal Brain Male	brain

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