Variant report

Variant	rs10811614
Chromosome Location	chr9:21779466-21779467
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10115601	1.00[EUR][1000 genomes]
rs10811599	1.00[AMR][1000 genomes]
rs10811612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10811624	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10965139	1.00[EUR][1000 genomes]
rs10965146	0.89[EUR][1000 genomes]
rs10965147	0.88[EUR][1000 genomes]
rs10965150	0.84[EUR][1000 genomes]
rs12348884	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13300161	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1544195	0.86[EUR][1000 genomes]
rs71506705	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1026981	chr9:21748202-21811697	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
3	nsv1016579	chr9:21756285-21785335	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21776000-21779600	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr9:21776000-21780200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr9:21776200-21779600	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr9:21776200-21779600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr9:21776400-21779600	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr9:21777000-21779800	Enhancers	NH-A	brain
7	chr9:21777000-21780200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr9:21777000-21780200	Enhancers	Osteobl	bone
9	chr9:21777200-21779600	Enhancers	HSMMtube	muscle
10	chr9:21777200-21779800	Enhancers	HSMM	muscle
11	chr9:21777200-21780000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr9:21777200-21780200	Enhancers	Muscle Satellite Cultured Cells	--
13	chr9:21777600-21779600	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr9:21777600-21779600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr9:21777600-21780200	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr9:21777800-21780000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr9:21778000-21779600	Enhancers	NHDF-Ad	bronchial
18	chr9:21778200-21779600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr9:21778200-21779600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr9:21778200-21779800	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr9:21778200-21780200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr9:21778400-21779600	Enhancers	Primary T killer memory cells from peripheral blood	blood
23	chr9:21778400-21779600	Enhancers	Hela-S3	cervix
24	chr9:21778400-21779800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr9:21778400-21782200	Weak transcription	Stomach Mucosa	stomach
26	chr9:21778400-21782400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr9:21778800-21779600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
28	chr9:21779000-21780000	Enhancers	HMEC	breast
29	chr9:21779000-21780200	Enhancers	Monocytes-CD14+_RO01746	blood
30	chr9:21779000-21781000	Weak transcription	NHEK	skin
31	chr9:21779000-21781400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr9:21779200-21779800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr9:21779400-21779600	Enhancers	NHLF	lung

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