Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:21796497..21798731-chr9:21800652..21802433,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10115601	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10217131	0.82[CEU][hapmap]
rs10217379	0.89[CEU][hapmap]
rs10811612	0.95[EUR][1000 genomes]
rs10811614	1.00[EUR][1000 genomes]
rs10811624	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10965146	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10965147	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10965150	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12337510	0.80[CEU][hapmap]
rs12348884	0.95[EUR][1000 genomes]
rs12378675	1.00[CEU][hapmap];0.92[ASN][1000 genomes]
rs13300161	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1544195	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2185683	0.92[ASN][1000 genomes]
rs3931609	0.80[CEU][hapmap]
rs4375086	0.89[CEU][hapmap]
rs4543632	0.89[CEU][hapmap]
rs6475581	0.89[CEU][hapmap]
rs6475583	0.82[CEU][hapmap]
rs6475584	0.80[CEU][hapmap]
rs6475590	0.92[ASN][1000 genomes]
rs71506705	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7851125	0.80[CEU][hapmap]
rs7860126	0.80[CEU][hapmap]
rs7867176	0.80[CEU][hapmap]
rs7871477	0.80[CEU][hapmap]
rs7874112	0.80[CEU][hapmap]
rs885518	0.80[CEU][hapmap]
rs9722004	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1026981	chr9:21748202-21811697	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
3	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21790200-21801000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:21790200-21801200	Weak transcription	NHEK	skin
3	chr9:21796600-21797200	Enhancers	NH-A	brain
4	chr9:21796600-21797400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr9:21796600-21797400	Bivalent Enhancer	HUVEC	blood vessel
6	chr9:21796800-21797200	Enhancers	Osteobl	bone
7	chr9:21796800-21800000	Weak transcription	Placenta	Placenta
8	chr9:21796800-21801200	Weak transcription	NHDF-Ad	bronchial
9	chr9:21797000-21797200	Flanking Active TSS	A549	lung
10	chr9:21797000-21797400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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