Variant report

Variant	rs885518
Chromosome Location	chr9:21830157-21830158
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:21829244..21831745-chr9:22100291..22103460,3	MCF-7	breast:
2	chr9:21829031..21830656-chr9:22083088..22085058,2	MCF-7	breast:
3	chr9:21828987..21830849-chr9:22080193..22082601,3	MCF-7	breast:
4	chr9:21827757..21830493-chr9:21833555..21836512,2	MCF-7	breast:

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10217131	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10217379	0.91[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10429489	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10511700	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10757256	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10811616	0.82[ASN][1000 genomes]
rs10811619	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10811624	0.81[CEU][hapmap]
rs10811631	0.85[JPT][hapmap]
rs10965124	0.83[ASN][1000 genomes]
rs10965131	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10965150	0.81[CEU][hapmap]
rs10965157	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10965158	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12002663	0.86[ASN][1000 genomes]
rs12004745	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12336678	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12336734	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12337510	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12340988	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12348845	0.83[ASN][1000 genomes]
rs12378675	0.80[CEU][hapmap]
rs12379110	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12380313	0.83[ASN][1000 genomes]
rs12380373	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13286524	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13302653	0.91[CEU][hapmap];0.92[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1414258	0.81[ASN][1000 genomes]
rs1414259	0.81[ASN][1000 genomes]
rs1440992	0.83[ASN][1000 genomes]
rs1544195	0.81[CEU][hapmap]
rs2039971	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2282245	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35235093	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35526535	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3802393	0.82[MEX][hapmap]
rs3931609	0.91[CEU][hapmap];0.87[CHD][hapmap];0.96[GIH][hapmap];0.92[JPT][hapmap];0.87[MEX][hapmap];0.94[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4295749	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4326466	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4375086	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.87[TSI][hapmap]
rs4399022	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4543632	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.94[TSI][hapmap]
rs55656405	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59990401	0.82[ASN][1000 genomes]
rs6475575	0.81[ASN][1000 genomes]
rs6475580	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6475581	0.91[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6475582	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6475583	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6475584	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6475588	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6475589	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs66587337	0.81[ASN][1000 genomes]
rs7029287	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7033148	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7040432	0.83[ASN][1000 genomes]
rs7040895	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7041509	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7042728	0.91[CEU][hapmap];0.89[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7042884	0.81[ASN][1000 genomes]
rs7851125	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.88[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7859886	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7860126	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7866362	0.81[ASN][1000 genomes]
rs7866533	0.81[ASN][1000 genomes]
rs7866860	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7867176	1.00[CEU][hapmap];0.80[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7868253	0.82[ASN][1000 genomes]
rs7869680	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7871477	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7871631	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7874112	0.91[CEU][hapmap];0.86[CHD][hapmap];0.96[GIH][hapmap];0.92[JPT][hapmap];0.88[MEX][hapmap];0.94[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9298826	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs945263	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21804000-21838200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:21806600-21841200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr9:21809200-21836800	Weak transcription	Small Intestine	intestine
4	chr9:21814000-21831800	Weak transcription	Fetal Heart	heart
5	chr9:21814400-21831800	Weak transcription	Stomach Mucosa	stomach
6	chr9:21814400-21837400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr9:21814400-21845200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr9:21816400-21836600	Weak transcription	Psoas Muscle	Psoas
9	chr9:21816600-21833800	Weak transcription	Fetal Brain Male	brain
10	chr9:21816800-21833200	Weak transcription	Brain Angular Gyrus	brain
11	chr9:21817400-21830200	Weak transcription	Colon Smooth Muscle	Colon
12	chr9:21817400-21837800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr9:21817800-21840600	Weak transcription	Colonic Mucosa	Colon
14	chr9:21818600-21840800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr9:21818800-21840400	Weak transcription	Right Ventricle	heart
16	chr9:21819000-21831400	Weak transcription	NHLF	lung
17	chr9:21819400-21830800	Weak transcription	HUVEC	blood vessel
18	chr9:21819400-21831400	Weak transcription	Placenta	Placenta
19	chr9:21819400-21831800	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr9:21819400-21833800	Weak transcription	Rectal Smooth Muscle	rectum
21	chr9:21819400-21840400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr9:21819400-21841600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr9:21819600-21830600	Weak transcription	Brain Cingulate Gyrus	brain
24	chr9:21819800-21832400	Weak transcription	Brain Anterior Caudate	brain
25	chr9:21823000-21830600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr9:21823800-21840400	Strong transcription	Fetal Muscle Leg	muscle
27	chr9:21824000-21830800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr9:21824000-21831200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr9:21824200-21840400	Strong transcription	Fetal Lung	lung
30	chr9:21824400-21830200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr9:21824400-21831000	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr9:21824400-21831000	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr9:21824400-21831200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr9:21824400-21831400	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr9:21824600-21831200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr9:21824600-21831200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr9:21824800-21830200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr9:21824800-21831200	Strong transcription	Primary T helper cells PMA-I stimulated	--
39	chr9:21825000-21831400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr9:21825000-21832400	Weak transcription	Fetal Brain Female	brain
41	chr9:21825000-21840000	Strong transcription	Fetal Intestine Large	intestine
42	chr9:21825000-21840600	Strong transcription	Dnd41	blood
43	chr9:21825000-21841800	Strong transcription	Primary T cells from cord blood	blood
44	chr9:21825000-21841800	Strong transcription	Primary T cells fromperipheralblood	blood
45	chr9:21825200-21830400	Strong transcription	HMEC	breast
46	chr9:21825200-21831000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr9:21825200-21831200	Strong transcription	Adipose Nuclei	Adipose
48	chr9:21825200-21831400	Strong transcription	Hela-S3	cervix
49	chr9:21825200-21831600	Strong transcription	Left Ventricle	heart
50	chr9:21825200-21832000	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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