Variant report

Variant	rs4295749
Chromosome Location	chr9:21842300-21842301
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10217131	0.85[EUR][1000 genomes]
rs10217379	0.82[EUR][1000 genomes]
rs10965157	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10965158	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12337510	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13302653	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2282245	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3802393	0.82[AMR][1000 genomes]
rs3931609	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4399022	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6475584	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6475588	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6475589	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7026112	0.84[AMR][1000 genomes]
rs7029287	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7033148	0.82[EUR][1000 genomes]
rs7041509	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7042302	0.84[AMR][1000 genomes]
rs7042728	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7851125	0.88[EUR][1000 genomes]
rs7856455	0.89[ASN][1000 genomes]
rs7859886	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7860126	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7867176	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7869680	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7871477	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7874112	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs885518	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21814400-21845200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr9:21832200-21852400	Weak transcription	Stomach Mucosa	stomach
3	chr9:21833800-21843200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr9:21837000-21843600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr9:21837200-21844600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr9:21837200-21850400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:21837800-21842400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr9:21837800-21843200	Weak transcription	Psoas Muscle	Psoas
9	chr9:21838200-21843000	Strong transcription	NH-A	brain
10	chr9:21838200-21848000	Weak transcription	Brain Anterior Caudate	brain
11	chr9:21838400-21843200	Strong transcription	Muscle Satellite Cultured Cells	--
12	chr9:21838400-21849000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr9:21838600-21842400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr9:21838800-21842600	Strong transcription	Primary B cells from peripheral blood	blood
15	chr9:21839400-21854400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr9:21839600-21846600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr9:21840200-21846800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
18	chr9:21840400-21843000	ZNF genes & repeats	Fetal Lung	lung
19	chr9:21840400-21844600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
20	chr9:21840400-21846600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
21	chr9:21840600-21843400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
22	chr9:21840600-21843400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr9:21840600-21844800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
24	chr9:21840600-21849000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
25	chr9:21840800-21842600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
26	chr9:21840800-21848800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr9:21841400-21858800	Weak transcription	Colonic Mucosa	Colon
28	chr9:21841600-21843400	Weak transcription	Brain Angular Gyrus	brain
29	chr9:21841600-21845000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr9:21841600-21845200	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr9:21841600-21845600	Weak transcription	Brain Substantia Nigra	brain
32	chr9:21841600-21847600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr9:21841600-21847800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr9:21841600-21854200	Weak transcription	Hela-S3	cervix
35	chr9:21841600-21854400	Weak transcription	NHLF	lung
36	chr9:21841600-21854600	Weak transcription	NHDF-Ad	bronchial
37	chr9:21841600-21858400	Weak transcription	Spleen	Spleen
38	chr9:21841800-21843600	Weak transcription	Esophagus	oesophagus
39	chr9:21841800-21844400	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr9:21841800-21844600	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr9:21841800-21845200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr9:21841800-21845400	Weak transcription	Aorta	Aorta
43	chr9:21841800-21846600	Weak transcription	Fetal Intestine Small	intestine
44	chr9:21841800-21847400	Weak transcription	Colon Smooth Muscle	Colon
45	chr9:21841800-21847600	Weak transcription	Rectal Smooth Muscle	rectum
46	chr9:21841800-21847600	Weak transcription	Dnd41	blood
47	chr9:21841800-21847600	Weak transcription	HSMM	muscle
48	chr9:21841800-21847600	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr9:21841800-21847800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr9:21841800-21847800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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