Variant report

Variant	rs7856455
Chromosome Location	chr9:21840834-21840835
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10965157	0.89[ASN][1000 genomes]
rs10965158	0.89[ASN][1000 genomes]
rs12002663	0.81[AMR][1000 genomes]
rs12004745	0.81[AMR][1000 genomes]
rs2039971	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4295749	0.89[ASN][1000 genomes]
rs4399022	0.89[ASN][1000 genomes]
rs56166190	0.81[AMR][1000 genomes]
rs58570889	0.86[AMR][1000 genomes]
rs6475588	0.89[ASN][1000 genomes]
rs6475589	0.89[ASN][1000 genomes]
rs67134687	0.91[AMR][1000 genomes]
rs7041509	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21806600-21841200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:21814400-21845200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr9:21819400-21841600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr9:21825000-21841800	Strong transcription	Primary T cells from cord blood	blood
5	chr9:21825000-21841800	Strong transcription	Primary T cells fromperipheralblood	blood
6	chr9:21825200-21841400	Strong transcription	Fetal Thymus	thymus
7	chr9:21825200-21842200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr9:21831800-21842000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr9:21832200-21842000	Strong transcription	Duodenum Mucosa	Duodenum
10	chr9:21832200-21852400	Weak transcription	Stomach Mucosa	stomach
11	chr9:21832400-21841800	Strong transcription	Stomach Smooth Muscle	stomach
12	chr9:21832600-21841200	Weak transcription	Fetal Heart	heart
13	chr9:21833000-21841800	Strong transcription	Brain Hippocampus Middle	brain
14	chr9:21833000-21842000	Strong transcription	Primary T helper cells PMA-I stimulated	--
15	chr9:21833400-21842000	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr9:21833600-21841800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr9:21833600-21841800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr9:21833800-21842000	Strong transcription	Liver	Liver
19	chr9:21833800-21843200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr9:21834600-21841200	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr9:21836000-21842000	Strong transcription	Duodenum Smooth Muscle	Duodenum
22	chr9:21836600-21842200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr9:21836800-21841800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr9:21837000-21841200	Weak transcription	Brain Angular Gyrus	brain
25	chr9:21837000-21843600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr9:21837200-21841400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr9:21837200-21842000	Strong transcription	Left Ventricle	heart
28	chr9:21837200-21842000	ZNF genes & repeats	GM12878-XiMat	blood
29	chr9:21837200-21844600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr9:21837200-21850400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr9:21837400-21841000	Strong transcription	Aorta	Aorta
32	chr9:21837400-21841600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr9:21837400-21842000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr9:21837400-21842000	Strong transcription	Adipose Nuclei	Adipose
35	chr9:21837600-21841600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr9:21837600-21842000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
37	chr9:21837800-21841800	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr9:21837800-21841800	Strong transcription	HSMM	muscle
39	chr9:21837800-21842000	Strong transcription	Rectal Mucosa Donor 29	rectum
40	chr9:21837800-21842000	Strong transcription	HSMMtube	muscle
41	chr9:21837800-21842200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr9:21837800-21842400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr9:21837800-21843200	Weak transcription	Psoas Muscle	Psoas
44	chr9:21838000-21842000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr9:21838000-21842000	Strong transcription	Rectal Mucosa Donor 31	rectum
46	chr9:21838200-21841600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr9:21838200-21841600	Strong transcription	NHDF-Ad	bronchial
48	chr9:21838200-21841800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr9:21838200-21842000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr9:21838200-21842000	Strong transcription	Osteobl	bone

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