Variant report

Variant	rs10965157
Chromosome Location	chr9:21840193-21840194
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10217131	0.85[EUR][1000 genomes]
rs10217379	0.82[EUR][1000 genomes]
rs10965158	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12337510	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13302653	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2282245	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3802393	0.82[AMR][1000 genomes]
rs3931609	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4295749	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4399022	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6475584	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6475588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6475589	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7026112	0.84[AMR][1000 genomes]
rs7029287	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7033148	0.82[EUR][1000 genomes]
rs7041509	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7042302	0.84[AMR][1000 genomes]
rs7042728	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7851125	0.88[EUR][1000 genomes]
rs7856455	0.89[ASN][1000 genomes]
rs7859886	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7860126	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7867176	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7869680	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7871477	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7874112	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs885518	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21806600-21841200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:21814400-21845200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr9:21817800-21840600	Weak transcription	Colonic Mucosa	Colon
4	chr9:21818600-21840800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr9:21818800-21840400	Weak transcription	Right Ventricle	heart
6	chr9:21819400-21840400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr9:21819400-21841600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr9:21823800-21840400	Strong transcription	Fetal Muscle Leg	muscle
9	chr9:21824200-21840400	Strong transcription	Fetal Lung	lung
10	chr9:21825000-21840600	Strong transcription	Dnd41	blood
11	chr9:21825000-21841800	Strong transcription	Primary T cells from cord blood	blood
12	chr9:21825000-21841800	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr9:21825200-21840200	Weak transcription	Pancreas	Pancrea
14	chr9:21825200-21840800	Strong transcription	Fetal Muscle Trunk	muscle
15	chr9:21825200-21841400	Strong transcription	Fetal Thymus	thymus
16	chr9:21825200-21842200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr9:21825400-21840400	Strong transcription	HUES48 Cell Line	embryonic stem cell
18	chr9:21825400-21840600	Strong transcription	H1 Cell Line	embryonic stem cell
19	chr9:21825800-21840200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
20	chr9:21825800-21840600	Strong transcription	HUES64 Cell Line	embryonic stem cell
21	chr9:21825800-21840600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr9:21826000-21840800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
23	chr9:21831000-21840600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr9:21831800-21842000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr9:21832000-21840200	Strong transcription	Cortex derived primary cultured neurospheres	brain
26	chr9:21832200-21840400	Strong transcription	Ovary	ovary
27	chr9:21832200-21842000	Strong transcription	Duodenum Mucosa	Duodenum
28	chr9:21832200-21852400	Weak transcription	Stomach Mucosa	stomach
29	chr9:21832400-21840600	Strong transcription	HUES6 Cell Line	embryonic stem cell
30	chr9:21832400-21841800	Strong transcription	Stomach Smooth Muscle	stomach
31	chr9:21832600-21841200	Weak transcription	Fetal Heart	heart
32	chr9:21833000-21841800	Strong transcription	Brain Hippocampus Middle	brain
33	chr9:21833000-21842000	Strong transcription	Primary T helper cells PMA-I stimulated	--
34	chr9:21833400-21842000	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr9:21833600-21841800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr9:21833600-21841800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr9:21833800-21840400	Weak transcription	Gastric	stomach
38	chr9:21833800-21842000	Strong transcription	Liver	Liver
39	chr9:21833800-21843200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr9:21834600-21840200	Weak transcription	Esophagus	oesophagus
41	chr9:21834600-21841200	Strong transcription	Monocytes-CD14+_RO01746	blood
42	chr9:21835400-21840600	Weak transcription	Brain Cingulate Gyrus	brain
43	chr9:21836000-21842000	Strong transcription	Duodenum Smooth Muscle	Duodenum
44	chr9:21836600-21842200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr9:21836800-21841800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr9:21837000-21840600	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr9:21837000-21841200	Weak transcription	Brain Angular Gyrus	brain
48	chr9:21837000-21843600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr9:21837200-21840600	Strong transcription	Fetal Stomach	stomach
50	chr9:21837200-21841400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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