Variant report

Variant	rs7042728
Chromosome Location	chr9:21831629-21831630
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:21829244..21831745-chr9:22100291..22103460,3	MCF-7	breast:
2	chr9:21830900..21838533-chr9:22079723..22086252,27	MCF-7	breast:
3	chr9:21830834..21834057-chr9:21834525..21838075,6	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10217131	0.85[CEU][hapmap];0.89[CHB][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10217379	0.83[CEU][hapmap];0.89[CHB][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10429489	0.82[ASN][1000 genomes]
rs10511700	0.89[CHB][hapmap];0.87[JPT][hapmap]
rs10811631	0.87[JPT][hapmap]
rs10965157	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10965158	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12004745	0.89[CHB][hapmap];0.86[JPT][hapmap]
rs12336678	0.81[ASN][1000 genomes]
rs12336734	0.81[ASN][1000 genomes]
rs12337510	0.91[CEU][hapmap];0.89[CHB][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12379110	0.83[ASN][1000 genomes]
rs12380373	0.83[ASN][1000 genomes]
rs13302653	1.00[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2039971	0.89[CHB][hapmap];0.86[JPT][hapmap]
rs2282245	0.83[CEU][hapmap];0.89[CHB][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35235093	0.83[ASN][1000 genomes]
rs35526535	0.82[ASN][1000 genomes]
rs3931609	1.00[CEU][hapmap];0.88[CHB][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4295749	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4375086	0.83[CEU][hapmap];0.89[CHB][hapmap];0.86[JPT][hapmap]
rs4399022	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4543632	0.83[CEU][hapmap];0.89[CHB][hapmap];0.86[JPT][hapmap]
rs55656405	0.82[ASN][1000 genomes]
rs6475581	0.83[CEU][hapmap];0.89[CHB][hapmap];0.86[JPT][hapmap]
rs6475583	0.85[CEU][hapmap];0.89[CHB][hapmap];0.87[JPT][hapmap]
rs6475584	0.91[CEU][hapmap];0.89[CHB][hapmap];0.86[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6475588	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6475589	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7029287	0.92[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7033148	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7040895	0.80[ASN][1000 genomes]
rs7041509	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7851125	0.91[CEU][hapmap];0.89[CHB][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7859886	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7860126	0.91[CEU][hapmap];0.89[CHB][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7867176	0.91[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7869680	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7871477	0.91[CEU][hapmap];0.89[CHB][hapmap];0.86[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7871631	0.82[ASN][1000 genomes]
rs7874112	1.00[CEU][hapmap];0.88[CHB][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs885518	0.91[CEU][hapmap];0.89[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21804000-21838200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:21806600-21841200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr9:21809200-21836800	Weak transcription	Small Intestine	intestine
4	chr9:21814000-21831800	Weak transcription	Fetal Heart	heart
5	chr9:21814400-21831800	Weak transcription	Stomach Mucosa	stomach
6	chr9:21814400-21837400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr9:21814400-21845200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr9:21816400-21836600	Weak transcription	Psoas Muscle	Psoas
9	chr9:21816600-21833800	Weak transcription	Fetal Brain Male	brain
10	chr9:21816800-21833200	Weak transcription	Brain Angular Gyrus	brain
11	chr9:21817400-21837800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr9:21817800-21840600	Weak transcription	Colonic Mucosa	Colon
13	chr9:21818600-21840800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr9:21818800-21840400	Weak transcription	Right Ventricle	heart
15	chr9:21819400-21831800	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr9:21819400-21833800	Weak transcription	Rectal Smooth Muscle	rectum
17	chr9:21819400-21840400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr9:21819400-21841600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr9:21819800-21832400	Weak transcription	Brain Anterior Caudate	brain
20	chr9:21823800-21840400	Strong transcription	Fetal Muscle Leg	muscle
21	chr9:21824200-21840400	Strong transcription	Fetal Lung	lung
22	chr9:21825000-21832400	Weak transcription	Fetal Brain Female	brain
23	chr9:21825000-21840000	Strong transcription	Fetal Intestine Large	intestine
24	chr9:21825000-21840600	Strong transcription	Dnd41	blood
25	chr9:21825000-21841800	Strong transcription	Primary T cells from cord blood	blood
26	chr9:21825000-21841800	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr9:21825200-21832000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr9:21825200-21836600	Strong transcription	Fetal Stomach	stomach
29	chr9:21825200-21840200	Weak transcription	Pancreas	Pancrea
30	chr9:21825200-21840800	Strong transcription	Fetal Muscle Trunk	muscle
31	chr9:21825200-21841400	Strong transcription	Fetal Thymus	thymus
32	chr9:21825200-21842200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr9:21825400-21833800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr9:21825400-21834200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr9:21825400-21834400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr9:21825400-21840400	Strong transcription	HUES48 Cell Line	embryonic stem cell
37	chr9:21825400-21840600	Strong transcription	H1 Cell Line	embryonic stem cell
38	chr9:21825600-21832600	Weak transcription	Thymus	Thymus
39	chr9:21825600-21833200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr9:21825600-21833200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
41	chr9:21825800-21832000	Weak transcription	Brain Germinal Matrix	brain
42	chr9:21825800-21834000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr9:21825800-21838600	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr9:21825800-21840200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
45	chr9:21825800-21840600	Strong transcription	HUES64 Cell Line	embryonic stem cell
46	chr9:21825800-21840600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr9:21826000-21832000	Strong transcription	HUES6 Cell Line	embryonic stem cell
48	chr9:21826000-21832000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr9:21826000-21832400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr9:21826000-21833600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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