Variant report

Variant	rs1440992
Chromosome Location	chr9:21778711-21778712
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10217131	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10217379	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10429489	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10511698	0.87[ASN][1000 genomes]
rs10511699	0.87[ASN][1000 genomes]
rs10511700	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10757256	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10811606	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10811607	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10811609	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10811616	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10811619	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10811624	0.90[CEU][hapmap]
rs10811631	0.92[JPT][hapmap]
rs10965118	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10965124	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10965131	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10965150	0.83[CEU][hapmap]
rs12002238	0.85[ASN][1000 genomes]
rs12004745	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12336678	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12336734	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12337510	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12340988	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12348845	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12378675	0.82[CEU][hapmap]
rs12379110	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12380313	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12380373	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13286524	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13302653	0.85[CEU][hapmap];0.92[JPT][hapmap]
rs1414258	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1414259	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1544195	0.90[CEU][hapmap]
rs2039971	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2282245	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2383184	0.85[ASN][1000 genomes]
rs35235093	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35526535	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3931609	0.83[CEU][hapmap];0.92[JPT][hapmap]
rs4326466	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4375086	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4543632	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55656405	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56005066	0.85[ASN][1000 genomes]
rs56237731	0.84[ASN][1000 genomes]
rs56339876	0.84[ASN][1000 genomes]
rs58495931	0.85[ASN][1000 genomes]
rs59990401	0.82[ASN][1000 genomes]
rs61258965	0.85[ASN][1000 genomes]
rs6475567	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6475575	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6475580	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6475581	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6475582	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6475583	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6475584	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs66506556	0.88[ASN][1000 genomes]
rs66587337	0.84[ASN][1000 genomes]
rs66846966	0.80[ASN][1000 genomes]
rs67220270	0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs7022981	0.88[ASN][1000 genomes]
rs7029287	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7033148	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7037277	0.86[ASN][1000 genomes]
rs7040432	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7040895	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7042728	0.85[CEU][hapmap];0.87[CHB][hapmap];0.93[JPT][hapmap]
rs7042884	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7045771	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7048433	0.85[ASN][1000 genomes]
rs7846904	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7850447	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7851125	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7859886	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7860126	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7866362	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7866533	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7866860	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7867176	0.91[CEU][hapmap]
rs7868246	0.87[ASN][1000 genomes]
rs7868253	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7869680	0.83[ASN][1000 genomes]
rs7871477	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7871631	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7874112	0.83[CEU][hapmap];0.91[JPT][hapmap]
rs885518	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9298826	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs935054	0.88[ASN][1000 genomes]
rs945263	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1026981	chr9:21748202-21811697	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
3	nsv1016579	chr9:21756285-21785335	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21776000-21779600	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr9:21776000-21780200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr9:21776200-21779600	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr9:21776200-21779600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr9:21776400-21779200	Enhancers	Primary T cells from cord blood	blood
6	chr9:21776400-21779600	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr9:21776800-21779000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr9:21777000-21779800	Enhancers	NH-A	brain
9	chr9:21777000-21780200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:21777000-21780200	Enhancers	Osteobl	bone
11	chr9:21777200-21779600	Enhancers	HSMMtube	muscle
12	chr9:21777200-21779800	Enhancers	HSMM	muscle
13	chr9:21777200-21780000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr9:21777200-21780200	Enhancers	Muscle Satellite Cultured Cells	--
15	chr9:21777400-21778800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
16	chr9:21777400-21779000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr9:21777400-21779000	Enhancers	NHEK	skin
18	chr9:21777600-21778800	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr9:21777600-21778800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr9:21777600-21778800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr9:21777600-21779200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr9:21777600-21779600	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr9:21777600-21779600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr9:21777600-21780200	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr9:21777800-21779000	Enhancers	Primary B cells from cord blood	blood
26	chr9:21777800-21779000	Flanking Active TSS	HMEC	breast
27	chr9:21777800-21779200	Enhancers	Primary hematopoietic stem cells	blood
28	chr9:21777800-21780000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr9:21778000-21779000	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr9:21778000-21779000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
31	chr9:21778000-21779600	Enhancers	NHDF-Ad	bronchial
32	chr9:21778200-21779600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr9:21778200-21779600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
34	chr9:21778200-21779800	Enhancers	Primary T helper cells PMA-I stimulated	--
35	chr9:21778200-21780200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr9:21778400-21778800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr9:21778400-21779000	Enhancers	Dnd41	blood
38	chr9:21778400-21779600	Enhancers	Primary T killer memory cells from peripheral blood	blood
39	chr9:21778400-21779600	Enhancers	Hela-S3	cervix
40	chr9:21778400-21779800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr9:21778400-21782200	Weak transcription	Stomach Mucosa	stomach
42	chr9:21778400-21782400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr9:21778600-21778800	Enhancers	HUVEC	blood vessel
44	chr9:21778600-21779400	Weak transcription	NHLF	lung

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