Variant report

Variant	rs66506556
Chromosome Location	chr9:21781478-21781479
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10217131	0.81[ASN][1000 genomes]
rs10217379	0.84[ASN][1000 genomes]
rs10429489	0.88[ASN][1000 genomes]
rs10511698	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10511699	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10511700	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10757256	0.91[ASN][1000 genomes]
rs10811616	0.91[ASN][1000 genomes]
rs10811619	0.90[ASN][1000 genomes]
rs10965124	0.86[ASN][1000 genomes]
rs10965131	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs12002238	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12002663	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12004745	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12336678	0.89[ASN][1000 genomes]
rs12336734	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs12340988	0.90[ASN][1000 genomes]
rs12348845	0.86[ASN][1000 genomes]
rs12379110	0.86[ASN][1000 genomes]
rs12380313	0.80[ASN][1000 genomes]
rs12380373	0.86[ASN][1000 genomes]
rs13286524	0.90[ASN][1000 genomes]
rs1414258	0.84[ASN][1000 genomes]
rs1414259	0.84[ASN][1000 genomes]
rs1440992	0.88[ASN][1000 genomes]
rs2039971	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2282245	0.81[ASN][1000 genomes]
rs2383184	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35235093	0.87[ASN][1000 genomes]
rs35526535	0.85[ASN][1000 genomes]
rs4326466	0.91[ASN][1000 genomes]
rs55656405	0.88[ASN][1000 genomes]
rs55883148	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56005066	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56237731	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56339876	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58495931	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59990401	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61258965	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6475575	0.84[ASN][1000 genomes]
rs6475580	0.91[ASN][1000 genomes]
rs6475581	0.90[ASN][1000 genomes]
rs6475582	0.89[ASN][1000 genomes]
rs6475583	0.90[ASN][1000 genomes]
rs6475584	0.81[ASN][1000 genomes]
rs66587337	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66846966	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs67220270	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7022981	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7033148	0.84[ASN][1000 genomes]
rs7037277	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7040432	0.86[ASN][1000 genomes]
rs7040632	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7040895	0.85[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs7042884	0.84[ASN][1000 genomes]
rs7048433	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7850447	0.81[ASN][1000 genomes]
rs7851125	0.81[ASN][1000 genomes]
rs7859886	0.81[ASN][1000 genomes]
rs7860126	0.81[ASN][1000 genomes]
rs7866362	0.84[ASN][1000 genomes]
rs7866533	0.84[ASN][1000 genomes]
rs7866860	0.90[ASN][1000 genomes]
rs7868246	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7868253	0.84[ASN][1000 genomes]
rs7871477	0.81[ASN][1000 genomes]
rs7871631	0.88[ASN][1000 genomes]
rs9298826	0.90[ASN][1000 genomes]
rs935054	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs945263	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1026981	chr9:21748202-21811697	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
3	nsv1016579	chr9:21756285-21785335	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21778400-21782200	Weak transcription	Stomach Mucosa	stomach
2	chr9:21778400-21782400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr9:21779600-21788800	Weak transcription	NHDF-Ad	bronchial
4	chr9:21779800-21782200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr9:21779800-21788600	Weak transcription	NH-A	brain
6	chr9:21780200-21781600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:21780200-21788600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr9:21781200-21783400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr9:21781400-21781600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr9:21781400-21781600	Flanking Active TSS	NHEK	skin
11	chr9:21781400-21781800	Enhancers	HMEC	breast
12	chr9:21781400-21782200	Enhancers	Hela-S3	cervix
13	chr9:21781400-21782600	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr9:21781400-21782600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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