Variant report

Variant	rs55883148
Chromosome Location	chr9:21785493-21785494
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10511698	0.85[ASN][1000 genomes]
rs10511699	0.85[ASN][1000 genomes]
rs10511700	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10811619	0.81[ASN][1000 genomes]
rs12002238	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12002663	0.80[ASN][1000 genomes]
rs12004745	0.80[ASN][1000 genomes]
rs12336678	0.80[ASN][1000 genomes]
rs12336734	0.80[ASN][1000 genomes]
rs12340988	0.81[ASN][1000 genomes]
rs13286524	0.81[ASN][1000 genomes]
rs2383184	0.83[ASN][1000 genomes]
rs56005066	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56237731	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56339876	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58495931	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59990401	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61258965	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6475581	0.81[ASN][1000 genomes]
rs6475582	0.80[ASN][1000 genomes]
rs6475583	0.81[ASN][1000 genomes]
rs66506556	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs66587337	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67220270	0.87[ASN][1000 genomes]
rs7022981	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7037277	0.84[ASN][1000 genomes]
rs7040632	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7866860	0.81[ASN][1000 genomes]
rs7868246	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9298826	0.81[ASN][1000 genomes]
rs935054	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1026981	chr9:21748202-21811697	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
3	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21779600-21788800	Weak transcription	NHDF-Ad	bronchial
2	chr9:21779800-21788600	Weak transcription	NH-A	brain
3	chr9:21780200-21788600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr9:21782600-21787600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr9:21782600-21787800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr9:21782600-21788000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:21783400-21785600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr9:21783400-21788200	Weak transcription	Hela-S3	cervix
9	chr9:21785200-21785800	Enhancers	HMEC	breast
10	chr9:21785400-21788200	Weak transcription	NHEK	skin

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