Variant report

Variant	rs10816156
Chromosome Location	chr9:9643972-9643973
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:9639781..9641559-chr9:9642274..9644789,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10217295	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs10739195	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs10739196	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs10759083	0.94[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs10759084	0.83[CHB][hapmap];0.88[JPT][hapmap]
rs10759085	0.83[CHB][hapmap];0.94[JPT][hapmap]
rs10759087	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs10816149	0.84[YRI][hapmap]
rs10816159	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs10816160	0.83[CHB][hapmap];0.94[JPT][hapmap]
rs10816161	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs10816162	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs10816163	0.84[CHB][hapmap]
rs10977910	0.94[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs12351554	1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs1326767	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs16929976	0.92[YRI][hapmap]
rs16929992	0.89[YRI][hapmap]
rs2382038	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs2382040	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs4742609	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs7019835	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs7036531	0.84[JPT][hapmap]
rs7039700	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs7872414	0.81[CHB][hapmap]
rs9644897	0.83[CHB][hapmap];0.88[JPT][hapmap]
rs9644898	0.83[CHB][hapmap];0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv613308	chr9:9409606-9750139	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1033808	chr9:9431799-9777960	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv892264	chr9:9440838-9796577	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv892265	chr9:9476425-9796116	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1023524	chr9:9496356-9666553	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv892266	chr9:9506817-9704501	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv892270	chr9:9591059-9860735	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv613319	chr9:9630855-9778653	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv1028772	chr9:9631694-9779358	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:9643000-9645400	Enhancers	Dnd41	blood
2	chr9:9643400-9645000	Enhancers	Primary hematopoietic stem cells	blood
3	chr9:9643400-9647600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr9:9643600-9644600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr9:9643800-9644400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr9:9643800-9645000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links