Variant report

Variant	rs2382040
Chromosome Location	chr9:9681323-9681324
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10217295	0.95[CHB][hapmap]
rs10739195	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs10739196	1.00[CHB][hapmap]
rs10759083	0.84[CHB][hapmap]
rs10759084	1.00[CHB][hapmap]
rs10759085	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs10759087	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs10759088	0.89[CHB][hapmap];0.88[JPT][hapmap]
rs10759089	0.89[CHB][hapmap];0.88[JPT][hapmap]
rs10816156	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs10816159	1.00[CHB][hapmap]
rs10816160	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs10816161	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs10816162	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs10816163	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs10977910	0.85[CHB][hapmap]
rs12351554	0.83[JPT][hapmap]
rs1326767	1.00[CHB][hapmap]
rs1934264	0.88[JPT][hapmap]
rs2382038	0.95[CHB][hapmap]
rs4742609	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs4742610	0.95[CEU][hapmap];0.90[CHB][hapmap]
rs4742611	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap]
rs7019835	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs7036531	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs7039700	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs7872414	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9644897	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9644898	1.00[CHB][hapmap];0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv613308	chr9:9409606-9750139	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1033808	chr9:9431799-9777960	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv892264	chr9:9440838-9796577	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv892265	chr9:9476425-9796116	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv892266	chr9:9506817-9704501	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv892270	chr9:9591059-9860735	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv613319	chr9:9630855-9778653	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1028772	chr9:9631694-9779358	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv2422381	chr9:9647540-9887820	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1020468	chr9:9658670-9780975	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv539983	chr9:9658670-9780975	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv892271	chr9:9673320-9718066	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
13	nsv892272	chr9:9673320-9718066	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
14	nsv892273	chr9:9673320-9730366	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:9681200-9681400	Enhancers	Liver	Liver

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