Variant report

Variant	rs10759088
Chromosome Location	chr9:9698530-9698531
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10217295	0.83[CHB][hapmap]
rs10739195	0.89[CHB][hapmap]
rs10739196	0.89[CHB][hapmap]
rs10759084	0.89[CHB][hapmap]
rs10759085	0.89[CHB][hapmap];0.82[CHD][hapmap]
rs10759087	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs10759089	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs10816149	0.84[YRI][hapmap]
rs10816159	0.89[CHB][hapmap]
rs10816160	0.89[CHB][hapmap]
rs10816161	0.84[CHB][hapmap]
rs10816162	0.89[CHB][hapmap]
rs10816163	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs1326767	0.89[CHB][hapmap]
rs1934264	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs2382038	0.84[CHB][hapmap]
rs2382040	0.89[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs4742609	0.89[CHB][hapmap];0.88[JPT][hapmap]
rs4742610	0.91[GIH][hapmap];0.84[JPT][hapmap];0.87[MEX][hapmap];0.84[MKK][hapmap];0.87[TSI][hapmap]
rs4742611	0.84[CHB][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.82[MKK][hapmap]
rs7019835	0.89[CHB][hapmap];0.88[JPT][hapmap]
rs7036531	0.83[CHB][hapmap];0.88[JPT][hapmap]
rs7039700	0.89[CHB][hapmap];0.89[CHD][hapmap];0.88[JPT][hapmap]
rs7872414	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs9644897	0.89[CHB][hapmap];0.87[CHD][hapmap];0.84[GIH][hapmap];0.83[JPT][hapmap];0.87[MEX][hapmap];0.85[TSI][hapmap]
rs9644898	0.89[CHB][hapmap];0.89[CHD][hapmap];0.88[JPT][hapmap]
rs9657637	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv613308	chr9:9409606-9750139	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1033808	chr9:9431799-9777960	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv892264	chr9:9440838-9796577	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv892265	chr9:9476425-9796116	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv892266	chr9:9506817-9704501	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv892270	chr9:9591059-9860735	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv613319	chr9:9630855-9778653	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1028772	chr9:9631694-9779358	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv2422381	chr9:9647540-9887820	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1020468	chr9:9658670-9780975	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv539983	chr9:9658670-9780975	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv892271	chr9:9673320-9718066	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
13	nsv892272	chr9:9673320-9718066	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
14	nsv892273	chr9:9673320-9730366	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
15	nsv892274	chr9:9687742-9787587	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10759088	TMEM141	trans	brain	seeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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