Variant report

Variant	rs10816348
Chromosome Location	chr9:98441107-98441108
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10816534	0.82[ASN][1000 genomes]
rs10816549	0.82[ASN][1000 genomes]
rs10978343	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991300	0.98[ASN][1000 genomes]
rs10991380	0.98[ASN][1000 genomes]
rs4743153	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58552429	0.97[ASN][1000 genomes]
rs6478489	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430083	chr9:98204245-98445645	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1041997	chr9:98322355-98442175	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv540176	chr9:98322355-98442175	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98436600-98442000	Weak transcription	Ovary	ovary
2	chr9:98439800-98441200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:98440000-98441400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr9:98440800-98441200	Enhancers	Esophagus	oesophagus
5	chr9:98440800-98441200	Enhancers	Gastric	stomach
6	chr9:98440800-98441200	Enhancers	Pancreas	Pancrea
7	chr9:98440800-98441400	Bivalent/Poised TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr9:98440800-98441400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr9:98441000-98442000	Enhancers	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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