Variant report

Variant	rs6478489
Chromosome Location	chr9:98428619-98428620
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10761012	0.83[CHB][hapmap]
rs10816348	0.82[ASN][1000 genomes]
rs10978343	0.82[ASN][1000 genomes]
rs10991300	0.84[ASN][1000 genomes]
rs10991380	0.84[ASN][1000 genomes]
rs4743153	0.82[ASN][1000 genomes]
rs58552429	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531633	chr9:98078300-98431120	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv430083	chr9:98204245-98445645	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1041997	chr9:98322355-98442175	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv540176	chr9:98322355-98442175	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6478489	NOL8	cis	parietal	SCAN

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98428200-98429000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:98428200-98429400	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr9:98428200-98430600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr9:98428200-98430800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr9:98428200-98433600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:98428400-98429000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
7	chr9:98428400-98429000	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr9:98428400-98429000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr9:98428400-98430400	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr9:98428600-98428800	Bivalent Enhancer	Fetal Stomach	stomach
11	chr9:98428600-98429000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:98428600-98429000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr9:98428600-98429000	Enhancers	Lung	lung
14	chr9:98428600-98429000	Enhancers	Ovary	ovary
15	chr9:98428600-98429000	Enhancers	Pancreas	Pancrea
16	chr9:98428600-98429200	Enhancers	H9 Cell Line	embryonic stem cell
17	chr9:98428600-98429400	Enhancers	H1 Cell Line	embryonic stem cell
18	chr9:98428600-98429400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr9:98428600-98429400	Enhancers	Brain Cingulate Gyrus	brain
20	chr9:98428600-98429600	Enhancers	Brain Anterior Caudate	brain
21	chr9:98428600-98429800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr9:98428600-98430800	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr9:98428600-98432000	Enhancers	Fetal Lung	lung

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