Variant report

Variant	rs10817543
Chromosome Location	chr9:116744825-116744826
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:116744244..116746965-chr9:116747110..116750106,2	K562	blood:
2	chr9:116739203..116741852-chr9:116742167..116746206,3	MCF-7	breast:
3	chr9:116623176..116625450-chr9:116743720..116745461,2	K562	blood:
4	chr9:116744244..116746965-chr9:116747110..116750106,4	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1006540	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1006541	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10441747	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10513224	0.98[ASN][1000 genomes]
rs10759668	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10759670	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10759671	0.94[ASN][1000 genomes]
rs10759672	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10759673	0.92[ASN][1000 genomes]
rs10759674	0.89[ASN][1000 genomes]
rs10817544	0.81[ASN][1000 genomes]
rs10817545	0.81[AMR][1000 genomes]
rs10817547	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10817548	0.92[ASN][1000 genomes]
rs10817549	0.92[ASN][1000 genomes]
rs11788583	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12682865	0.82[ASN][1000 genomes]
rs13285834	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1330171	0.80[ASN][1000 genomes]
rs1408112	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1408113	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1408114	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1535764	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1886129	0.95[ASN][1000 genomes]
rs1928699	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2026139	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2418262	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2418263	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4497041	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4641141	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4979310	0.82[ASN][1000 genomes]
rs4979311	0.82[ASN][1000 genomes]
rs4979316	0.81[ASN][1000 genomes]
rs56221603	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6478050	0.92[ASN][1000 genomes]
rs7020561	0.84[ASN][1000 genomes]
rs7023499	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7031814	0.92[ASN][1000 genomes]
rs7032124	0.92[ASN][1000 genomes]
rs7034528	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7036201	0.92[ASN][1000 genomes]
rs7850217	0.89[ASN][1000 genomes]
rs7863348	0.92[ASN][1000 genomes]
rs7863469	0.92[ASN][1000 genomes]
rs814701	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs860082	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9332459	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9695257	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9696305	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116717200-116754600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr9:116720400-116754200	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr9:116720800-116750600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr9:116721200-116750800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr9:116721200-116756400	Weak transcription	NHEK	skin
6	chr9:116721400-116751200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr9:116728200-116754600	Weak transcription	Thymus	Thymus
8	chr9:116731800-116755600	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr9:116732000-116750600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr9:116732000-116750600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr9:116732000-116750600	Weak transcription	HMEC	breast
12	chr9:116732000-116753000	Weak transcription	Esophagus	oesophagus
13	chr9:116732200-116750000	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr9:116732200-116750800	Weak transcription	Adipose Nuclei	Adipose
15	chr9:116732200-116753800	Weak transcription	Fetal Brain Female	brain
16	chr9:116732200-116754200	Weak transcription	Primary hematopoietic stem cells	blood
17	chr9:116732200-116768800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr9:116732200-116773400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr9:116732400-116745800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr9:116732400-116750400	Weak transcription	Brain Germinal Matrix	brain
21	chr9:116732600-116762600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr9:116733000-116768600	Weak transcription	Fetal Kidney	kidney
23	chr9:116733400-116748400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr9:116733400-116800200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr9:116733600-116750200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr9:116734000-116746400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr9:116734200-116750200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr9:116734200-116750400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr9:116734200-116750600	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr9:116734400-116746400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr9:116734400-116746600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr9:116735000-116750600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr9:116735800-116754200	Weak transcription	Right Ventricle	heart
34	chr9:116736000-116746000	Weak transcription	Fetal Lung	lung
35	chr9:116736400-116783000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr9:116736600-116754000	Weak transcription	Duodenum Mucosa	Duodenum
37	chr9:116736800-116750200	Weak transcription	Fetal Intestine Large	intestine
38	chr9:116736800-116750600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr9:116736800-116751600	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr9:116737200-116746400	Weak transcription	Fetal Intestine Small	intestine
41	chr9:116737200-116750200	Weak transcription	A549	lung
42	chr9:116737200-116750600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr9:116738200-116750800	Weak transcription	Brain Hippocampus Middle	brain
44	chr9:116738800-116750800	Strong transcription	Fetal Stomach	stomach
45	chr9:116738800-116753400	Weak transcription	Brain Anterior Caudate	brain
46	chr9:116738800-116753800	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr9:116739400-116745800	Weak transcription	Fetal Muscle Trunk	muscle
48	chr9:116739400-116746400	Weak transcription	Pancreas	Pancrea
49	chr9:116740000-116745600	Weak transcription	Spleen	Spleen
50	chr9:116740000-116750600	Weak transcription	Lung	lung

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