Variant report

Variant	rs10817549
Chromosome Location	chr9:116754061-116754062
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:116752377..116754625-chr9:116769656..116771790,2	MCF-7	breast:
2	chr9:116753360..116755709-chr9:116755784..116758340,2	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1006540	0.92[ASN][1000 genomes]
rs1006541	0.92[ASN][1000 genomes]
rs10441747	0.93[ASN][1000 genomes]
rs10513224	0.94[ASN][1000 genomes]
rs10759668	0.92[ASN][1000 genomes]
rs10759669	0.84[ASN][1000 genomes]
rs10759670	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10759671	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10759672	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10759673	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10759674	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10817543	0.92[ASN][1000 genomes]
rs10817545	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10817546	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10817547	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10817548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10817556	0.86[ASN][1000 genomes]
rs10982031	0.84[ASN][1000 genomes]
rs10982032	0.86[ASN][1000 genomes]
rs11788583	0.94[ASN][1000 genomes]
rs11791155	0.84[ASN][1000 genomes]
rs11791230	0.86[ASN][1000 genomes]
rs13285834	0.94[ASN][1000 genomes]
rs1330171	0.83[ASN][1000 genomes]
rs1408112	0.94[ASN][1000 genomes]
rs1408113	0.94[ASN][1000 genomes]
rs1408114	0.94[ASN][1000 genomes]
rs1535764	0.89[ASN][1000 genomes]
rs1886129	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1928699	0.94[ASN][1000 genomes]
rs2026139	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2418262	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2418263	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4497041	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4641141	0.95[ASN][1000 genomes]
rs4979310	0.81[ASN][1000 genomes]
rs4979311	0.81[ASN][1000 genomes]
rs4979316	0.86[ASN][1000 genomes]
rs4979323	0.81[ASN][1000 genomes]
rs56221603	0.86[ASN][1000 genomes]
rs6478050	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7020561	0.90[ASN][1000 genomes]
rs7023499	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7026668	0.81[ASN][1000 genomes]
rs7031814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7032124	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7034528	0.94[ASN][1000 genomes]
rs7036001	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7036201	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7036206	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7041487	0.81[ASN][1000 genomes]
rs7042021	0.86[ASN][1000 genomes]
rs7042081	0.81[ASN][1000 genomes]
rs7850217	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7863348	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7863469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs814701	0.93[ASN][1000 genomes]
rs860082	0.92[ASN][1000 genomes]
rs9332459	0.92[ASN][1000 genomes]
rs9696305	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116717200-116754600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr9:116720400-116754200	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr9:116721200-116756400	Weak transcription	NHEK	skin
4	chr9:116728200-116754600	Weak transcription	Thymus	Thymus
5	chr9:116731800-116755600	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr9:116732200-116754200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr9:116732200-116768800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr9:116732200-116773400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr9:116732600-116762600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr9:116733000-116768600	Weak transcription	Fetal Kidney	kidney
11	chr9:116733400-116800200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr9:116735800-116754200	Weak transcription	Right Ventricle	heart
13	chr9:116736400-116783000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr9:116741200-116754400	Weak transcription	Colon Smooth Muscle	Colon
15	chr9:116741400-116756200	Weak transcription	Rectal Smooth Muscle	rectum
16	chr9:116741600-116754800	Weak transcription	Primary B cells from cord blood	blood
17	chr9:116746400-116756600	Strong transcription	Fetal Intestine Small	intestine
18	chr9:116747600-116756200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr9:116748200-116754200	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr9:116748600-116754200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr9:116748800-116755800	Weak transcription	NH-A	brain
22	chr9:116749000-116756800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr9:116749200-116755600	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr9:116749400-116756400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr9:116749800-116754800	Enhancers	Placenta	Placenta
26	chr9:116749800-116759200	Enhancers	Liver	Liver
27	chr9:116750000-116754400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr9:116750000-116756800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr9:116750200-116755600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr9:116750200-116756200	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr9:116750200-116756800	Enhancers	HSMMtube	muscle
32	chr9:116750600-116754400	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr9:116750600-116754600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr9:116750800-116754400	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr9:116751000-116754600	Enhancers	Adipose Nuclei	Adipose
36	chr9:116751000-116773400	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr9:116751800-116754800	Weak transcription	Primary T cells from cord blood	blood
38	chr9:116752000-116754600	Enhancers	Brain Substantia Nigra	brain
39	chr9:116752000-116754800	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr9:116752000-116764600	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr9:116752200-116754400	Weak transcription	Aorta	Aorta
42	chr9:116752200-116756000	Weak transcription	Small Intestine	intestine
43	chr9:116752200-116760000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr9:116752200-116764200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr9:116752400-116756000	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr9:116752400-116757000	Enhancers	Lung	lung
47	chr9:116752400-116762000	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr9:116752600-116754600	Enhancers	Brain Inferior Temporal Lobe	brain
49	chr9:116752600-116754600	Weak transcription	Colonic Mucosa	Colon
50	chr9:116752600-116756200	Weak transcription	H9 Cell Line	embryonic stem cell

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