Variant report
| Variant | rs10817744 |
|---|---|
| Chromosome Location | chr9:118075246-118075247 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-C9orf91-5 | chr9:118074491-118076759 | NONHSAT134410 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10817746 | 0.82[EUR][1000 genomes] |
| rs10817752 | 0.86[ASN][1000 genomes] |
| rs10817753 | 0.86[ASN][1000 genomes] |
| rs10982674 | 0.82[EUR][1000 genomes] |
| rs10982677 | 0.86[ASN][1000 genomes] |
| rs10982678 | 0.86[ASN][1000 genomes] |
| rs10982679 | 0.86[ASN][1000 genomes] |
| rs10982680 | 0.86[ASN][1000 genomes] |
| rs10982683 | 0.86[ASN][1000 genomes] |
| rs10982688 | 0.86[ASN][1000 genomes] |
| rs10982690 | 0.86[ASN][1000 genomes] |
| rs10982698 | 0.86[ASN][1000 genomes] |
| rs11788001 | 0.83[ASN][1000 genomes] |
| rs11788880 | 0.86[ASN][1000 genomes] |
| rs11791820 | 0.86[ASN][1000 genomes] |
| rs2418333 | 0.81[ASN][1000 genomes] |
| rs4449863 | 0.83[ASN][1000 genomes] |
| rs59879497 | 0.82[AFR][1000 genomes];0.86[ASN][1000 genomes] |
| rs62577483 | 0.81[ASN][1000 genomes] |
| rs7048610 | 0.83[ASN][1000 genomes] |
| rs72748109 | 0.83[ASN][1000 genomes] |
| rs7858557 | 0.83[ASN][1000 genomes] |
| rs7863937 | 0.86[ASN][1000 genomes] |
| rs7866297 | 0.86[ASN][1000 genomes] |
| rs7866511 | 0.86[ASN][1000 genomes] |
| rs7871330 | 0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv615251 | chr9:117975864-118514444 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
