Variant report

Variant	rs10817746
Chromosome Location	chr9:118091712-118091713
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10817744	0.82[EUR][1000 genomes]
rs10982674	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118089000-118091800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr9:118091000-118095000	Weak transcription	Fetal Lung	lung
3	chr9:118091200-118092800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr9:118091400-118091800	Weak transcription	Small Intestine	intestine
5	chr9:118091400-118092800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr9:118091400-118092800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr9:118091400-118092800	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr9:118091400-118093000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr9:118091400-118095200	Weak transcription	Fetal Stomach	stomach
10	chr9:118091400-118095800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr9:118091400-118098000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr9:118091600-118095800	Weak transcription	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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