Variant report

Variant	rs10818540
Chromosome Location	chr9:100926776-100926777
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:100926427..100928565-chr9:100932052..100933723,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10985266	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10985279	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10985302	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3758261	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3758262	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3780456	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7023194	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7032570	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7847003	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7868004	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482635	chr9:100775549-100953239	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv893613	chr9:100885779-100943397	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1053729	chr9:100909554-100997718	Weak transcription Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100889200-100930800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr9:100891000-100930800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:100896000-100931000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr9:100898400-100931200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr9:100899200-100930600	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr9:100909200-100930800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr9:100909400-100933600	Weak transcription	Colonic Mucosa	Colon
8	chr9:100913400-100930400	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr9:100914600-100931000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr9:100917600-100933400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr9:100919400-100930800	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr9:100919600-100932200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr9:100919800-100927000	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr9:100919800-100927800	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr9:100920000-100931000	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr9:100920400-100942200	Weak transcription	Primary T cells from cord blood	blood
17	chr9:100921800-100935200	Weak transcription	Lung	lung
18	chr9:100922000-100929600	Genic enhancers	Fetal Intestine Small	intestine
19	chr9:100922200-100930600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr9:100922400-100930200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr9:100922400-100933600	Weak transcription	Gastric	stomach
22	chr9:100924400-100927000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr9:100924400-100927400	Enhancers	Stomach Mucosa	stomach
24	chr9:100924600-100927000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr9:100924600-100927200	Enhancers	Fetal Thymus	thymus
26	chr9:100924600-100928200	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr9:100924600-100939000	Enhancers	Duodenum Mucosa	Duodenum
28	chr9:100924800-100931600	Weak transcription	Right Atrium	heart
29	chr9:100924800-100935000	Enhancers	Fetal Intestine Large	intestine
30	chr9:100925200-100930800	Weak transcription	Spleen	Spleen
31	chr9:100925200-100931200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
32	chr9:100925400-100927000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr9:100925400-100927600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
34	chr9:100925600-100927400	Enhancers	Rectal Mucosa Donor 31	rectum
35	chr9:100925600-100927600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
36	chr9:100925800-100927200	Enhancers	Liver	Liver
37	chr9:100925800-100927400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
38	chr9:100925800-100927600	Enhancers	Primary T cells fromperipheralblood	blood
39	chr9:100925800-100927800	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr9:100925800-100928200	Enhancers	Primary T helper cells fromperipheralblood	blood
41	chr9:100926000-100926800	Enhancers	Rectal Mucosa Donor 29	rectum
42	chr9:100926000-100927000	Enhancers	Sigmoid Colon	Sigmoid Colon
43	chr9:100926000-100927000	Enhancers	Thymus	Thymus
44	chr9:100926000-100928200	Enhancers	HepG2	liver
45	chr9:100926200-100927200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
46	chr9:100926200-100927200	Enhancers	Primary T helper naive cells from peripheral blood	blood
47	chr9:100926200-100932000	Weak transcription	Esophagus	oesophagus
48	chr9:100926200-100935000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr9:100926400-100927000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
50	chr9:100926400-100927000	Genic enhancers	NHEK	skin

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