Variant report

Variant	rs7032570
Chromosome Location	chr9:100927547-100927548
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:100927078..100929954-chr9:100954199..100956475,2	MCF-7	breast:
2	chr9:100926427..100928565-chr9:100932052..100933723,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106789	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10818540	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10985266	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10985279	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2417733	0.82[CHD][hapmap]
rs3758261	0.98[ASN][1000 genomes]
rs3758262	0.98[ASN][1000 genomes]
rs3780456	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7023194	0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs7847003	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7862309	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7868004	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482635	chr9:100775549-100953239	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv893613	chr9:100885779-100943397	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1053729	chr9:100909554-100997718	Weak transcription Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv520067	chr9:100927161-100978542	Genic enhancers Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7032570	CDC14B	cis	parietal	SCAN

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100889200-100930800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr9:100891000-100930800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:100896000-100931000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr9:100898400-100931200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr9:100899200-100930600	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr9:100909200-100930800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr9:100909400-100933600	Weak transcription	Colonic Mucosa	Colon
8	chr9:100913400-100930400	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr9:100914600-100931000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr9:100917600-100933400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr9:100919400-100930800	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr9:100919600-100932200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr9:100919800-100927800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr9:100920000-100931000	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr9:100920400-100942200	Weak transcription	Primary T cells from cord blood	blood
16	chr9:100921800-100935200	Weak transcription	Lung	lung
17	chr9:100922000-100929600	Genic enhancers	Fetal Intestine Small	intestine
18	chr9:100922200-100930600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr9:100922400-100930200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr9:100922400-100933600	Weak transcription	Gastric	stomach
21	chr9:100924600-100928200	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr9:100924600-100939000	Enhancers	Duodenum Mucosa	Duodenum
23	chr9:100924800-100931600	Weak transcription	Right Atrium	heart
24	chr9:100924800-100935000	Enhancers	Fetal Intestine Large	intestine
25	chr9:100925200-100930800	Weak transcription	Spleen	Spleen
26	chr9:100925200-100931200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
27	chr9:100925400-100927600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
28	chr9:100925600-100927600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr9:100925800-100927600	Enhancers	Primary T cells fromperipheralblood	blood
30	chr9:100925800-100927800	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr9:100925800-100928200	Enhancers	Primary T helper cells fromperipheralblood	blood
32	chr9:100926000-100928200	Enhancers	HepG2	liver
33	chr9:100926200-100932000	Weak transcription	Esophagus	oesophagus
34	chr9:100926200-100935000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr9:100926400-100928200	Enhancers	Small Intestine	intestine
36	chr9:100926600-100930400	Weak transcription	HMEC	breast
37	chr9:100926600-100930600	Weak transcription	GM12878-XiMat	blood
38	chr9:100926800-100934800	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr9:100927000-100927600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr9:100927000-100927600	Enhancers	Primary monocytes fromperipheralblood	blood
41	chr9:100927000-100928200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr9:100927000-100928400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr9:100927000-100930600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr9:100927000-100930800	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr9:100927000-100936800	Weak transcription	Thymus	Thymus
46	chr9:100927200-100928000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr9:100927200-100929800	Weak transcription	Primary B cells from cord blood	blood
48	chr9:100927200-100930600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr9:100927200-100930800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr9:100927200-100930800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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