Variant report

Variant	rs10820916
Chromosome Location	chr9:94683714-94683715
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:94682144..94685075-chr9:94711793..94713631,2	MCF-7	breast:
2	chr9:94664745..94669992-chr9:94681267..94685780,5	K562	blood:
3	chr9:94667170..94669992-chr9:94682219..94685194,2	K562	blood:

Variant related genes	Relation type
ENSG00000169071	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10820917	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10820919	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10820921	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10820922	0.93[EUR][1000 genomes]
rs10820928	0.91[EUR][1000 genomes]
rs10992161	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992162	0.81[AMR][1000 genomes]
rs10992165	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10992166	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10992168	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1892263	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1919101	0.88[EUR][1000 genomes]
rs3932420	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56013831	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56272949	0.90[EUR][1000 genomes]
rs56280154	0.91[EUR][1000 genomes]
rs56309039	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62565747	0.80[EUR][1000 genomes]
rs62565755	0.93[EUR][1000 genomes]
rs72746299	0.93[EUR][1000 genomes]
rs7862013	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7866775	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv530946	chr9:94633154-94715023	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94670600-94686200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:94678000-94685000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr9:94678200-94686600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:94678800-94686200	Weak transcription	Ovary	ovary
5	chr9:94679600-94684200	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr9:94681400-94683800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr9:94681400-94691400	Weak transcription	Pancreas	Pancrea
8	chr9:94682400-94683800	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr9:94682600-94683800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
10	chr9:94682600-94683800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
11	chr9:94682600-94684000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr9:94682600-94684600	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr9:94682800-94683800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
14	chr9:94682800-94684000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr9:94682800-94684000	Enhancers	Fetal Stomach	stomach
16	chr9:94683000-94684600	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr9:94683000-94684600	Enhancers	Stomach Smooth Muscle	stomach
18	chr9:94683000-94687200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr9:94683400-94686200	Weak transcription	Gastric	stomach
20	chr9:94683600-94684400	Weak transcription	Colon Smooth Muscle	Colon
21	chr9:94683600-94684600	Weak transcription	Right Atrium	heart
22	chr9:94683600-94685200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr9:94683600-94685200	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr9:94683600-94685200	Weak transcription	Rectal Smooth Muscle	rectum
25	chr9:94683600-94686000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr9:94683600-94691800	Weak transcription	Fetal Lung	lung
27	chr9:94683600-94692000	Weak transcription	K562	blood

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