Variant report

Variant	rs62565747
Chromosome Location	chr9:94678097-94678098
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:94676298..94678105-chr9:94680028..94681662,2	MCF-7	breast:
2	chr9:94666595..94672238-chr9:94672403..94678372,8	K562	blood:
3	chr9:94676427..94678807-chr9:94685179..94687567,2	K562	blood:
4	chr9:94663383..94666047-chr9:94676965..94679095,2	K562	blood:
5	chr9:94673439..94675902-chr9:94676796..94680111,3	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10761137	0.84[EUR][1000 genomes]
rs10820915	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10820916	0.80[EUR][1000 genomes]
rs10992158	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10992159	0.82[EUR][1000 genomes]
rs11792319	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12380829	0.81[EUR][1000 genomes]
rs1609292	0.86[EUR][1000 genomes]
rs1881384	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1919102	0.83[EUR][1000 genomes]
rs1919103	0.87[EUR][1000 genomes]
rs2030992	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3905385	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4275276	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4347043	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4347044	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4430151	0.81[EUR][1000 genomes]
rs57688942	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62565678	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62565679	0.81[EUR][1000 genomes]
rs6479383	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72746246	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv530946	chr9:94633154-94715023	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94668800-94682800	Weak transcription	Colonic Mucosa	Colon
2	chr9:94670200-94678400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr9:94670200-94682800	Weak transcription	Fetal Kidney	kidney
4	chr9:94670400-94681200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr9:94670400-94682800	Weak transcription	Right Atrium	heart
6	chr9:94670600-94686200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:94671600-94682600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr9:94671800-94678200	Weak transcription	Fetal Lung	lung
9	chr9:94671800-94678200	Weak transcription	Ovary	ovary
10	chr9:94674600-94679400	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr9:94674600-94679400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr9:94676400-94678200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:94676600-94679800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr9:94676800-94678200	Strong transcription	Fetal Stomach	stomach
15	chr9:94677000-94680000	Weak transcription	Spleen	Spleen
16	chr9:94677400-94678200	Weak transcription	Colon Smooth Muscle	Colon
17	chr9:94677400-94678400	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr9:94677400-94683000	Weak transcription	K562	blood
19	chr9:94677600-94679600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr9:94677600-94682800	Weak transcription	Fetal Intestine Large	intestine
21	chr9:94678000-94678800	Enhancers	Stomach Smooth Muscle	stomach
22	chr9:94678000-94685000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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