Variant report

Variant	rs3905385
Chromosome Location	chr9:94668733-94668734
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:94664745..94669992-chr9:94681267..94685780,5	K562	blood:
2	chr9:94667170..94669992-chr9:94682219..94685194,2	K562	blood:
3	chr9:94513749..94516669-chr9:94667565..94670057,2	K562	blood:
4	chr9:94668680..94671587-chr9:94678743..94680656,2	K562	blood:
5	chr9:94667534..94670775-chr9:94707582..94710553,5	K562	blood:
6	chr9:94668298..94670919-chr9:94728281..94730524,2	K562	blood:
7	chr9:94650894..94652826-chr9:94665751..94669153,3	K562	blood:
8	chr9:94666595..94672238-chr9:94672403..94678372,8	K562	blood:
9	chr9:94645315..94647676-chr9:94666839..94670309,3	K562	blood:
10	chr9:94667321..94670775-chr9:94706336..94711619,7	K562	blood:

No data

Variant related genes	Relation type
ENSG00000169071	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10761133	0.81[CEU][hapmap]
rs10761135	0.81[CEU][hapmap]
rs10761137	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs10820914	0.92[CEU][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10820915	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992149	0.83[CEU][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes]
rs10992151	0.92[CEU][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10992158	0.82[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10992159	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11789973	0.91[CEU][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11792319	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12683797	0.83[CEU][hapmap];0.83[JPT][hapmap];0.83[AMR][1000 genomes]
rs1609292	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs1881384	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1919102	0.80[EUR][1000 genomes]
rs1919103	0.84[EUR][1000 genomes]
rs2030992	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4275276	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4347043	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4347044	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4430151	0.95[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4517189	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4744112	0.81[CEU][hapmap]
rs4744113	0.84[CEU][hapmap];0.84[JPT][hapmap]
rs57688942	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58431919	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59723153	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62565678	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62565679	0.83[EUR][1000 genomes]
rs62565747	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6479383	0.96[CEU][hapmap]
rs72746246	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv530946	chr9:94633154-94715023	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3347273	chr9:94666131-94669029	Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94662200-94669400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:94664800-94669600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr9:94665400-94669600	Weak transcription	Ovary	ovary
4	chr9:94665800-94669600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr9:94667000-94669600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr9:94667000-94670200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr9:94667000-94671600	Enhancers	Fetal Heart	heart
8	chr9:94667800-94669000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr9:94667800-94669000	Active TSS	Rectal Smooth Muscle	rectum
10	chr9:94667800-94672200	Weak transcription	Small Intestine	intestine
11	chr9:94668000-94669000	Flanking Active TSS	Dnd41	blood
12	chr9:94668000-94669200	Active TSS	Duodenum Mucosa	Duodenum
13	chr9:94668000-94670400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr9:94668000-94671400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr9:94668200-94668800	Enhancers	Primary B cells from peripheral blood	blood
16	chr9:94668200-94668800	Active TSS	Primary T cells from cord blood	blood
17	chr9:94668200-94668800	Active TSS	Primary T helper naive cells from peripheral blood	blood
18	chr9:94668200-94668800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
19	chr9:94668200-94668800	Active TSS	A549	lung
20	chr9:94668200-94669000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr9:94668200-94669000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
22	chr9:94668200-94669000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr9:94668200-94669000	Active TSS	Duodenum Smooth Muscle	Duodenum
24	chr9:94668200-94669000	Bivalent/Poised TSS	Osteobl	bone
25	chr9:94668200-94669200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
26	chr9:94668200-94670600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr9:94668400-94668800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr9:94668400-94668800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr9:94668400-94668800	Active TSS	Breast Myoepithelial Primary Cells	Breast
30	chr9:94668400-94668800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
31	chr9:94668400-94668800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
32	chr9:94668400-94668800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
33	chr9:94668400-94668800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
34	chr9:94668400-94668800	Active TSS	Primary T killer memory cells from peripheral blood	blood
35	chr9:94668400-94668800	Bivalent/Poised TSS	Muscle Satellite Cultured Cells	--
36	chr9:94668400-94668800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr9:94668400-94668800	Active TSS	Brain Hippocampus Middle	brain
38	chr9:94668400-94668800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
39	chr9:94668400-94668800	Active TSS	Brain Substantia Nigra	brain
40	chr9:94668400-94668800	Active TSS	Esophagus	oesophagus
41	chr9:94668400-94668800	Enhancers	Fetal Kidney	kidney
42	chr9:94668400-94668800	Active TSS	Pancreatic Islets	Pancreatic Islet
43	chr9:94668400-94668800	Flanking Active TSS	Fetal Lung	lung
44	chr9:94668400-94668800	Flanking Active TSS	Fetal Thymus	thymus
45	chr9:94668400-94668800	Active TSS	Gastric	stomach
46	chr9:94668400-94668800	Bivalent/Poised TSS	Psoas Muscle	Psoas
47	chr9:94668400-94668800	Active TSS	Sigmoid Colon	Sigmoid Colon
48	chr9:94668400-94668800	Active TSS	Skeletal Muscle Male	skeletal muscle
49	chr9:94668400-94668800	Active TSS	Thymus	Thymus
50	chr9:94668400-94668800	Active TSS	Spleen	Spleen

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