Variant report

Variant	rs10820935
Chromosome Location	chr9:94810264-94810265
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:94803091..94807436-chr9:94808499..94811192,5	K562	blood:
2	chr9:94807642..94810045-chr9:94810085..94812250,2	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10820926	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10820927	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10820929	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10820938	0.84[ASN][1000 genomes]
rs10992173	0.84[EUR][1000 genomes]
rs10992176	0.84[EUR][1000 genomes]
rs10992177	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10992178	0.88[EUR][1000 genomes]
rs10992179	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10992180	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10992183	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10992190	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10992212	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992215	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992216	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10992220	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992221	0.82[ASN][1000 genomes]
rs10992222	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992230	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10992231	0.81[ASN][1000 genomes]
rs10992233	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992235	0.88[EUR][1000 genomes]
rs10992236	0.88[EUR][1000 genomes]
rs11533009	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12235309	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12235310	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12235495	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12236121	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12237221	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12237598	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12238682	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12337180	0.84[ASN][1000 genomes]
rs12683519	0.81[EUR][1000 genomes]
rs16908003	0.84[EUR][1000 genomes]
rs16908021	0.84[EUR][1000 genomes]
rs16908135	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16908137	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1892267	0.84[EUR][1000 genomes]
rs1892269	0.84[EUR][1000 genomes]
rs2096388	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3858090	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4641129	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs5000044	0.80[EUR][1000 genomes]
rs58909848	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59114373	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59183854	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59232045	0.80[EUR][1000 genomes]
rs59856128	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7022553	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7033030	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7847966	0.82[ASN][1000 genomes]
rs7849220	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7852067	0.84[ASN][1000 genomes]
rs7858659	0.85[ASN][1000 genomes]
rs7862826	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7872515	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv1046733	chr9:94690622-95138564	Genic enhancers Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv831653	chr9:94692454-94867542	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv530947	chr9:94697309-95093377	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
6	nsv982320	chr9:94799706-94821700	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94803200-94810400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr9:94803200-94813000	Strong transcription	HSMM	muscle
3	chr9:94803400-94821200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr9:94804000-94812800	Strong transcription	HUVEC	blood vessel
5	chr9:94804200-94812800	Strong transcription	NH-A	brain
6	chr9:94804200-94813000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr9:94804200-94813000	Strong transcription	Fetal Thymus	thymus
8	chr9:94804400-94812800	Strong transcription	Skeletal Muscle Female	skeletal muscle
9	chr9:94804400-94813000	Strong transcription	Primary T killer memory cells from peripheral blood	blood
10	chr9:94804400-94813400	Strong transcription	Rectal Mucosa Donor 29	rectum
11	chr9:94804600-94810800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr9:94804600-94812800	Strong transcription	Osteobl	bone
13	chr9:94804600-94817600	Strong transcription	Cortex derived primary cultured neurospheres	brain
14	chr9:94804800-94810400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
15	chr9:94804800-94814000	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr9:94805000-94812800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr9:94805000-94812800	Strong transcription	Fetal Intestine Large	intestine
18	chr9:94805000-94812800	Strong transcription	Rectal Mucosa Donor 31	rectum
19	chr9:94805000-94823200	Strong transcription	Duodenum Mucosa	Duodenum
20	chr9:94805200-94813000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr9:94805200-94813400	Strong transcription	Left Ventricle	heart
22	chr9:94805400-94812000	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr9:94805400-94813000	Strong transcription	HSMMtube	muscle
24	chr9:94805400-94821600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr9:94805600-94810800	Genic enhancers	K562	blood
26	chr9:94805600-94812200	Strong transcription	Sigmoid Colon	Sigmoid Colon
27	chr9:94805600-94812800	Strong transcription	Adipose Nuclei	Adipose
28	chr9:94805600-94813000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr9:94805600-94813000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr9:94805600-94813400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr9:94805600-94818000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr9:94805600-94822600	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr9:94805600-94823400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr9:94805800-94810800	Strong transcription	HUES6 Cell Line	embryonic stem cell
35	chr9:94805800-94812800	Strong transcription	Liver	Liver
36	chr9:94805800-94812800	Strong transcription	HepG2	liver
37	chr9:94805800-94813000	Strong transcription	Placenta	Placenta
38	chr9:94805800-94821200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr9:94805800-94822800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr9:94806000-94810400	Strong transcription	HUES64 Cell Line	embryonic stem cell
41	chr9:94806000-94811400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr9:94806000-94813000	Strong transcription	Fetal Muscle Leg	muscle
43	chr9:94806000-94813400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr9:94806000-94814800	Strong transcription	Primary T cells fromperipheralblood	blood
45	chr9:94806000-94823200	Strong transcription	Primary B cells from peripheral blood	blood
46	chr9:94806200-94811600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr9:94806400-94812600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr9:94806400-94813400	Strong transcription	NHEK	skin
49	chr9:94806400-94817800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr9:94806600-94812400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood

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