Variant report

Variant	rs16908137
Chromosome Location	chr9:94844150-94844151
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:94839775..94842197-chr9:94842980..94845500,2	K562	blood:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10820926	1.00[CEU][hapmap];0.93[JPT][hapmap];0.92[EUR][1000 genomes]
rs10820927	0.92[EUR][1000 genomes]
rs10820929	0.92[EUR][1000 genomes]
rs10820935	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10820938	0.82[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10992173	0.84[EUR][1000 genomes]
rs10992176	0.84[EUR][1000 genomes]
rs10992177	1.00[CEU][hapmap];0.93[JPT][hapmap];0.84[EUR][1000 genomes]
rs10992178	1.00[CEU][hapmap];0.93[JPT][hapmap];0.88[EUR][1000 genomes]
rs10992179	0.92[EUR][1000 genomes]
rs10992180	0.92[EUR][1000 genomes]
rs10992183	0.92[EUR][1000 genomes]
rs10992190	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10992212	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10992215	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10992216	1.00[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992220	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10992221	0.87[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs10992222	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10992230	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992231	0.80[ASN][1000 genomes]
rs10992233	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10992235	0.88[EUR][1000 genomes]
rs10992236	0.88[EUR][1000 genomes]
rs11533009	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12235309	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12235310	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12235495	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12236121	0.92[EUR][1000 genomes]
rs12237221	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12237598	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12238682	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12337180	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12683519	0.81[EUR][1000 genomes]
rs1317393	0.83[YRI][hapmap]
rs16907979	1.00[CEU][hapmap]
rs16908003	0.84[EUR][1000 genomes]
rs16908021	1.00[CEU][hapmap];0.93[JPT][hapmap];0.84[EUR][1000 genomes]
rs16908135	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1892267	0.84[EUR][1000 genomes]
rs1892269	0.84[EUR][1000 genomes]
rs2096388	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3858090	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4641129	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs5000044	0.80[EUR][1000 genomes]
rs58909848	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59114373	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59183854	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59232045	0.80[EUR][1000 genomes]
rs59856128	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7022553	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7033030	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7042585	1.00[CEU][hapmap]
rs7847966	0.83[ASN][1000 genomes]
rs7849220	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7852067	0.82[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs7858659	0.87[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs7862826	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7872515	0.87[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs7872765	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv1046733	chr9:94690622-95138564	Genic enhancers Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv831653	chr9:94692454-94867542	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv530947	chr9:94697309-95093377	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94810800-94860200	Weak transcription	Right Ventricle	heart
2	chr9:94817800-94877000	Weak transcription	Fetal Heart	heart
3	chr9:94820600-94844400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr9:94822400-94860200	Weak transcription	Stomach Mucosa	stomach
5	chr9:94823200-94844400	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr9:94824000-94860400	Weak transcription	Psoas Muscle	Psoas
7	chr9:94824800-94844200	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr9:94825400-94844200	Strong transcription	Primary T helper cells fromperipheralblood	blood
9	chr9:94825600-94844200	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr9:94825600-94844400	Strong transcription	Primary T cells fromperipheralblood	blood
11	chr9:94826800-94844400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr9:94826800-94844400	Strong transcription	Primary B cells from peripheral blood	blood
13	chr9:94826800-94844400	Strong transcription	Primary T cells from cord blood	blood
14	chr9:94827200-94856800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr9:94828800-94850600	Weak transcription	Fetal Brain Male	brain
16	chr9:94828800-94850600	Weak transcription	Fetal Kidney	kidney
17	chr9:94829000-94862600	Weak transcription	Hela-S3	cervix
18	chr9:94830000-94845200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr9:94830000-94850200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr9:94830000-94856800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr9:94830200-94856200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr9:94830200-94857000	Weak transcription	HUVEC	blood vessel
23	chr9:94830200-94860400	Weak transcription	Rectal Smooth Muscle	rectum
24	chr9:94830800-94850200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr9:94830800-94873800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr9:94832400-94850600	Weak transcription	A549	lung
27	chr9:94833000-94845800	Weak transcription	Brain Substantia Nigra	brain
28	chr9:94833000-94857000	Weak transcription	Brain Anterior Caudate	brain
29	chr9:94833000-94858000	Weak transcription	Brain Angular Gyrus	brain
30	chr9:94834400-94844200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr9:94834800-94845000	Weak transcription	Brain Cingulate Gyrus	brain
32	chr9:94837200-94844200	Strong transcription	HUES64 Cell Line	embryonic stem cell
33	chr9:94838400-94844400	Strong transcription	HUES48 Cell Line	embryonic stem cell
34	chr9:94838400-94850600	Weak transcription	GM12878-XiMat	blood
35	chr9:94839000-94850800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr9:94839400-94861000	Weak transcription	HMEC	breast
37	chr9:94840200-94865400	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr9:94840600-94850800	Weak transcription	HSMMtube	muscle
39	chr9:94840600-94850800	Weak transcription	K562	blood
40	chr9:94840600-94872000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr9:94841000-94850200	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr9:94841200-94850800	Weak transcription	HSMM	muscle
43	chr9:94842200-94850200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr9:94842200-94850600	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr9:94842200-94856400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr9:94842200-94860400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr9:94842200-94860400	Weak transcription	Pancreas	Pancrea
48	chr9:94842200-94860600	Weak transcription	Aorta	Aorta
49	chr9:94842200-94862400	Weak transcription	Esophagus	oesophagus
50	chr9:94842400-94850200	Weak transcription	Fetal Muscle Leg	muscle

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