Variant report

Variant	rs16907979
Chromosome Location	chr9:94683050-94683051
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:94682144..94685075-chr9:94711793..94713631,2	MCF-7	breast:
2	chr9:94664745..94669992-chr9:94681267..94685780,5	K562	blood:
3	chr9:94680096..94683212-chr9:94691490..94694919,3	K562	blood:
4	chr9:94667170..94669992-chr9:94682219..94685194,2	K562	blood:
5	chr9:94679676..94683212-chr9:94692527..94694919,4	K562	blood:

Variant related genes	Relation type
ENSG00000169071	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10820904	0.82[CEU][hapmap]
rs10820926	1.00[CEU][hapmap]
rs10820938	0.85[CEU][hapmap]
rs10992170	0.83[YRI][hapmap]
rs10992177	1.00[CEU][hapmap]
rs10992178	1.00[CEU][hapmap]
rs10992212	1.00[CEU][hapmap]
rs10992216	1.00[CEU][hapmap]
rs10992222	1.00[CEU][hapmap]
rs10992230	1.00[CEU][hapmap]
rs11533009	1.00[CEU][hapmap]
rs12235310	1.00[CEU][hapmap]
rs12235495	1.00[CEU][hapmap]
rs12237598	1.00[CEU][hapmap]
rs12684333	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12684752	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16908021	1.00[CEU][hapmap]
rs16908135	1.00[CEU][hapmap]
rs16908137	1.00[CEU][hapmap]
rs3750440	1.00[CHB][hapmap];0.90[CHD][hapmap];0.82[ASN][1000 genomes]
rs3858090	1.00[CEU][hapmap]
rs5000044	0.81[AMR][1000 genomes]
rs5000045	0.81[AMR][1000 genomes]
rs7033397	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7036525	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7042585	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7849220	1.00[CEU][hapmap]
rs7862826	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv530946	chr9:94633154-94715023	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94670600-94686200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:94678000-94685000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr9:94678200-94683600	Enhancers	Colon Smooth Muscle	Colon
4	chr9:94678200-94686600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:94678800-94686200	Weak transcription	Ovary	ovary
6	chr9:94679600-94684200	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr9:94681400-94683200	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr9:94681400-94683800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr9:94681400-94691400	Weak transcription	Pancreas	Pancrea
10	chr9:94682000-94683600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr9:94682400-94683200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr9:94682400-94683800	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr9:94682600-94683600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr9:94682600-94683600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
15	chr9:94682600-94683800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
16	chr9:94682600-94683800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
17	chr9:94682600-94684000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr9:94682600-94684600	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr9:94682800-94683200	Enhancers	Fetal Heart	heart
20	chr9:94682800-94683200	Enhancers	Fetal Kidney	kidney
21	chr9:94682800-94683400	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
22	chr9:94682800-94683400	Enhancers	Colonic Mucosa	Colon
23	chr9:94682800-94683400	Enhancers	Gastric	stomach
24	chr9:94682800-94683400	Enhancers	Rectal Mucosa Donor 29	rectum
25	chr9:94682800-94683600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr9:94682800-94683600	Enhancers	Fetal Lung	lung
27	chr9:94682800-94683600	Enhancers	Right Atrium	heart
28	chr9:94682800-94683800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
29	chr9:94682800-94684000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr9:94682800-94684000	Enhancers	Fetal Stomach	stomach
31	chr9:94683000-94683400	Weak transcription	Rectal Smooth Muscle	rectum
32	chr9:94683000-94683600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
33	chr9:94683000-94683600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr9:94683000-94683600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr9:94683000-94683600	Enhancers	K562	blood
36	chr9:94683000-94684600	Enhancers	iPS-15b Cell Line	embryonic stem cell
37	chr9:94683000-94684600	Enhancers	Stomach Smooth Muscle	stomach
38	chr9:94683000-94687200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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