Variant report

Variant	rs10821074
Chromosome Location	chr9:95895796-95895797
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:95870960..95873239-chr9:95894940..95897821,4	MCF-7	breast:
2	chr9:95895042..95899051-chr9:95945154..95949540,5	MCF-7	breast:
3	chr9:95818120..95822805-chr9:95894646..95898384,4	K562	blood:
4	chr15:96874474..96876437-chr9:95895214..95896846,2	MCF-7	breast:
5	chr9:95525332..95528852-chr9:95893539..95896445,3	MCF-7	breast:
6	chr9:95893830..95897202-chr9:96212872..96217148,4	MCF-7	breast:
7	chr9:95856253..95862485-chr9:95892353..95899486,12	MCF-7	breast:
8	chr9:95733025..95737240-chr9:95894074..95898257,5	MCF-7	breast:
9	chr9:95895341..95897817-chr9:99179220..99181040,2	MCF-7	breast:
10	chr9:95895047..95897771-chr9:96069097..96071737,2	MCF-7	breast:
11	chr9:95895154..95898000-chr9:96338001..96340609,3	MCF-7	breast:
12	chr9:95819594..95823966-chr9:95894549..95897415,5	MCF-7	breast:
13	chr9:95894765..95898074-chr9:96066261..96068998,4	MCF-7	breast:
14	chr9:95894803..95898160-chr9:96337820..96340366,3	MCF-7	breast:
15	chr9:95894917..95896473-chr9:96212218..96213888,2	MCF-7	breast:
16	chr9:95895534..95897628-chr9:96214404..96216660,2	MCF-7	breast:
17	chr9:95855662..95862507-chr9:95894736..95899302,16	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000188938	Chromatin interaction
ENSG00000127084	Chromatin interaction
ENSG00000048828	Chromatin interaction
ENSG00000185963	Chromatin interaction
ENSG00000185551	Chromatin interaction
ENSG00000157303	Chromatin interaction
ENSG00000197724	Chromatin interaction
ENSG00000165244	Chromatin interaction
ENSG00000165238	Chromatin interaction
ENSG00000223446	Chromatin interaction
ENSG00000165233	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10761194	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10821075	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821076	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12342201	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13287380	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1833035	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34881469	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35836942	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4744178	0.88[ASN][1000 genomes]
rs7039090	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7042420	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7043145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1035230	chr9:95770249-95934982	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	esv1824329	chr9:95811604-95921347	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv893579	chr9:95855100-95923091	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
6	nsv893580	chr9:95855100-96099377	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
7	nsv893581	chr9:95872216-95930334	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
8	nsv614879	chr9:95883363-95897564	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
9	nsv824982	chr9:95895045-95897753	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95890400-95896600	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
2	chr9:95890800-95896000	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
3	chr9:95891400-95895800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr9:95892800-95895800	Flanking Active TSS	Rectal Smooth Muscle	rectum
5	chr9:95893000-95896200	Flanking Active TSS	Adipose Nuclei	Adipose
6	chr9:95893200-95896000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr9:95893200-95896000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
8	chr9:95893200-95896000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
9	chr9:95893200-95896000	Flanking Active TSS	Stomach Smooth Muscle	stomach
10	chr9:95893400-95895800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
11	chr9:95893600-95895800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
12	chr9:95893800-95896000	Flanking Active TSS	Brain Hippocampus Middle	brain
13	chr9:95893800-95896000	Flanking Active TSS	Brain Substantia Nigra	brain
14	chr9:95893800-95896000	Flanking Active TSS	Placenta	Placenta
15	chr9:95893800-95896000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
16	chr9:95893800-95896400	Flanking Active TSS	Primary B cells from cord blood	blood
17	chr9:95894000-95896000	Flanking Active TSS	Duodenum Mucosa	Duodenum
18	chr9:95894200-95895800	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
19	chr9:95894200-95896000	Flanking Active TSS	Fetal Intestine Large	intestine
20	chr9:95894200-95896000	Flanking Active TSS	GM12878-XiMat	blood
21	chr9:95894400-95895800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
22	chr9:95894400-95895800	Flanking Active TSS	Liver	Liver
23	chr9:95894400-95895800	Flanking Active TSS	Hela-S3	cervix
24	chr9:95894400-95896000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
25	chr9:95894400-95896000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr9:95894400-95896000	Flanking Active TSS	Colonic Mucosa	Colon
27	chr9:95894400-95896000	Flanking Active TSS	Fetal Muscle Leg	muscle
28	chr9:95894600-95895800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr9:95894600-95895800	Flanking Active TSS	Brain Angular Gyrus	brain
30	chr9:95894600-95895800	Flanking Active TSS	Brain Anterior Caudate	brain
31	chr9:95894600-95895800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
32	chr9:95894600-95895800	Flanking Active TSS	Pancreas	Pancrea
33	chr9:95894600-95896000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr9:95894600-95896000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr9:95894600-95896000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
36	chr9:95894600-95896000	Flanking Active TSS	HMEC	breast
37	chr9:95894800-95895800	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr9:95894800-95895800	Flanking Active TSS	Primary T cells from cord blood	blood
39	chr9:95894800-95895800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
40	chr9:95894800-95895800	Flanking Active TSS	NHLF	lung
41	chr9:95894800-95896000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
42	chr9:95894800-95896000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
43	chr9:95894800-95896000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
44	chr9:95894800-95896000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr9:95894800-95896000	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
46	chr9:95894800-95896000	Flanking Active TSS	Fetal Muscle Trunk	muscle
47	chr9:95894800-95896000	Flanking Active TSS	Stomach Mucosa	stomach
48	chr9:95894800-95896000	Flanking Active TSS	Osteobl	bone
49	chr9:95894800-95897200	Active TSS	Aorta	Aorta
50	chr9:95895000-95895800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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